CI01000053_06050344_06056286


Basic Information

Item Value
gene id CI01000053_06050344_06056286
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6050344 ~ 6056649 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_06050344_06056286.mRNA
CCTCTAGAGGTGAGGGAGCCCAAGACGTCCCCTCATAAGGTGGCGGTGCTGGGCGTCTGGGCGAAGAACCAGACAGAGGGAGCCGCCATTACTGAGCTAGCTAATGCTCTGGAGAGTGGCAGGTTTGTCTATCGTGATATCGGTGGCTCTGACCCGGAGCGAATGGCTGCCCCACGTGTAGCTGAGTATGTTCAAGCAGTCTTCAAGGATAGTCCTGTAACGGTGACAGTAGTGAGTAATTTGAACATTCTGGAGAAGGAGTACCCCTGTTTGGCTGCAGTCAACCGCTGTGCTAACACTGTGCCGCGCCATCAGGCCAGAGTGATCAAGCTGAGTTACAGTGGAGAAGGACCCATTCAACAGACTCTCATGGTGGTTGGCAAGGGCATTACGTATGACACCGGTGGAGCGGACATCAAGGCCGGTGGAATCATGGCTGGAATGCACAGAGATAAATGTGGATCTGCGGCTGTTGCTGGCTTTTTCACGATCCTAGCCAAACTGAAGCCCAAACACCTGAAGGTTGTGGGTGCGATGGCAATGGTGCGGAACAGTGTCGGATCTGATTGTTATGTGGCAGATGAGTTGGTGGTGTCTCGTGCCGGTCGTAGAGTCCGAGTTGGAAACACTGATGCTGAAGGAAGAATGGTCATGGTGGACCTGCTGTGTGAGATGAAGGAGCAGGCGTTGAAGGAGGTGTCTCCTCATCTCTTCACTATTGCCACTCTGACAGGACATGCTATCAGAGCCATGGGACCGCACTACTCTGTGAGTACTTCAACATATCTTCCCAGGATCATAATGGATAACGGTGCTGCTCAACGCTCAGGAAACGCTCTGCAGTGGCAGAAAGCGGGAGAGGTGCTGGGAGATCTGTTTGAGGTGTCCACTATTCGTCGGGAGGATTATGAGTTCCACAAAGGGAAGTCTGAGTATGAGGAGATCCTGCAGTCCAATAACCTGCCCTCATCTGCCACACCACGGGGACACCAGACGCCTGCCGCCTTCCTCATCATGGCTTCTGGACTGGATAAGCATGGAGTGGACTCGGACAAACCTCTGCCTTACTCCCATATCGACATTGCTGGATCCAGCGGCCCTTTCCCTGGTGTCCCAACAGGAGCCCCAATTCTTGCCATGGCGACAAAGTACCTGCAGCTGTAAACATACGTCCAATGATTTTCTGTTCCTTCATTAATTCATCCTGTGCCATTTATCGATTAATAGCTTTCATATCTGCTCCGTCTGACACGCAGTGTGGCCAAATAATGGCAATTTTATCCTTCCATCATGAACACCATCCATCTTTATCCGTTCGTTGTCGCTCGATATATACATGAATGCATCTCTTTACGTCCTTAAAAAACCTCTGCGCTCCTCTCACTCATACACATAATCTTCTCATTTTATCACATTTTTTAGTACTGGTTTTCCATATCTAAGAAGCATTTACTGAGATTAACCAAACAAAAGCGTTTCATTTCTGTTCTTATCCTGTAGCCTTACAGTTTTCCAGTTGATCTGACA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_06050344_06056286.mRNA True 1527 mRNA 0.50 11 6050344 6056649

Neighbor

gene id symbol gene type direction distance location
CI01000053_06046867_06049295 NA coding upstream 1049 6046867 ~ 6049295 (+)
CI01000053_05976882_06023460 GPAT2 coding upstream 26653 5976882 ~ 6023691 (+)
CI01000053_05920285_05920932 NA coding upstream 129324 5920093 ~ 5921020 (+)
CI01000053_05818799_05861616 NA coding upstream 188472 5818799 ~ 5861872 (+)
CI01000053_05796556_05798076 ADRA2B coding upstream 250520 5795873 ~ 5799824 (+)
CI01000053_06095365_06103392 OLFML2A coding downstream 38716 6095365 ~ 6104033 (+)
CI01000053_06130926_06132991 NA coding downstream 74191 6130840 ~ 6133160 (+)
CI01000053_06148375_06153273 ARPC5LA, ARPC5LB, ARPC5L, ARPC5 coding downstream 91033 6147682 ~ 6153805 (+)
CI01000053_06157492_06158741 NA coding downstream 100843 6157492 ~ 6159597 (+)
CI01000053_06182140_06229627 NA coding downstream 125491 6182140 ~ 6230029 (+)
G228824 NA non-coding upstream 2672 6047431 ~ 6047672 (+)
G228823 NA non-coding upstream 15565 6034553 ~ 6034779 (+)
G228749 NA non-coding upstream 117950 5932115 ~ 5932394 (+)
G228739 NA non-coding upstream 130588 5919485 ~ 5919756 (+)
G228722 NA non-coding upstream 159402 5890554 ~ 5890942 (+)
G228827 NA non-coding downstream 19309 6075958 ~ 6076198 (+)
G228836 NA non-coding downstream 54819 6111468 ~ 6111943 (+)
G228845 NA non-coding downstream 67849 6124498 ~ 6124752 (+)
G228849 NA non-coding downstream 71634 6128283 ~ 6128592 (+)
G228850 NA non-coding downstream 72046 6128695 ~ 6128923 (+)
CI01000053_05471449_05512831 LRRC75B other upstream 537270 5471449 ~ 5513074 (+)
G228257 NA other upstream 671895 5375553 ~ 5378449 (+)
G227317 NA other upstream 1634751 4414951 ~ 4415593 (+)
G226399 NA other upstream 2352815 3620798 ~ 3697529 (+)
G226347 NA other upstream 2775433 3272374 ~ 3274911 (+)
CI01000053_06725452_06758944 NA other downstream 666550 6725452 ~ 6758944 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location