XLOC_009825 (si:dkey-17m8.2)


Basic Information

Item Value
gene id XLOC_009825
gene name si:dkey-17m8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18142127 ~ 18153001 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019618
AGAGTGAGTTATCTGACAGACGCGCGCTGTTTACAGTGGGGCAGAGGAGCTAATAGCAGAACTGGTTGTTACTTTTGGCGCAATTTATCATCATCGTGGTATATTATTGCGTTTATGGAAACTGCACAAACTCCAGCCTGTCAACAGATCAAGTCCACAAGTTTCCTCTTGCTATTTTGGTTTGTGAAATGGGATGAATCCGATAGGAGTGATAGCTGACGCGAACGGCGAGAAACACTCCTGGATCAGTCGAAGATGCAGCTCGATGGCTGTACACGACTTTGGGAGACAGAGATGATGACCCGGAGCTGAAGGCTTTCTCTCCACTGGCCTCTCGCTCAACTGTGCTTCACTTTGGCTCACAAAGTAACCTCAACTAAGgaCATGCCGAAGAAACAAGCATCGCAGAATTACACTCTCCATTCGCAAAGGATCACTGTTTCATAACTCCAGAATACCTTTGGTAAAGTGGATGGAATACATATATAGATTTTCACAGGGTCTACATTTAAGACAAATTGACTTGATGGATGATGGTGTTGCCAAAACTTCAACAACATTGTCCAGAATAAACAAATTGCTCAGAAAGGTTTGCATCAAGGCATTGAGTAATTTGAAAAGAAGAACAGGCCTTAGAGTTGGTGGAAAGTCAAGACAGAAGTTTGTGGCCATAGATGAGTCCAAGTTTGCTCACAAGAGAAAGGTATGTTTGATGTGAAAATGTTTATACTGTATACTTAGTAATTTTTACTATGTTGAAATACTAAAGTTCATTAACCTGCATTCAGTAATACTTCCAGAGTTAACATCACATCAAAATAGCACATGTAATCAAAAGCA
>TCONS_00019619
AATAGGAAAGCAAGGAAAGCGGCTTTCAGTTATACATTAGCTGTATCTGTTATAGCGCTATGCATACAGGGAAATTAAACAAGATTATACGGCTTTGCAGCGGTGGAAAACATAGAAAATTAGTGATCAAATGGCTACAGAGGAAAGGCTTGCTTTGTAAAGCACCTCATTGTCGCCAGTGTGGAAAAAAGATGAGTATTAAAGCCCACAGTGGACGTGATGGTTACATATGgaCATGCCGAAGAAACAAGCATCGCAGAATTACACTCTCCATTCGCAAAGGATCACTGTTTCATAACTCCAGAATACCTTTGGTAAAGTGGATGGAATACATATATAGATTTTCACAGGGTCTACATTTAAGACAAATTGACTTGATGGATGATGGTGTTGCCAAAACTTCAACAACATTGTCCAGAATAAACAAATTGCTCAGAAAGGTTTGCATCAAGGCATTGAGTAATTTGAAAAGAAGAACAGGCCTTAGAGTTGGTGGAAAGTCAAGACAGAAGTTTGTGGCCATAGATGAGTCCAAGTTTGCTCACAAGAGAAAGTTTAATCGTGGCCGCTTTTGTACTACTTGGCAGAGAAGAAAAGGATGGGTTTTTGGGATGATGGAGGTTAAAGGAGATCACCGCCTACCAGTCTTAAAGATGGTAAAGGACCGTTCCAGGACCACACTGGTGCCCATCATCACAAGGCACATCAGAAGGGGGTCAACTGTTTACAGTGACAATTGGAGGGCATATCTGAATGCATTACAACCTTTACGATACAGACACCTAACTGTTAATCACAGTGAAAATTTTGTTGATCCCCAAACTGGCTGTCACACACAACATATTGAAAGGGCTTGGCTTGCCATCAAGGCACAGGTATCAAGATTAAGGGGTAACAAGACTACAAAACTATTGAGAGAACATTTGAAATTCATTCAGTGGCACTACTGGCTGGGAAGGCGAAATAGTAAAGGTGCCTTAGCACAGCTTATCCATGACATTAGAAAAGCATACCGGGTTCATTGAAAATATATAtgccatttttttctcttttatttgctGTTTATATTGTGACATTTCTTCAGATTCTAAAATTTCCTGATAATACAAACAATTAacttgttttaatacattcatagtttactcaaaaaaatatttgtgtaaaatacTATGTTGCAGAGTAAAAAGTCAAATACAAATGTGACAGTTTTGATTTAATAGATCCTGGGATATTATTTACAGCACTGattgttttctttattgttatttaaaatttttcttttGTGATTGCTGGCACTCTGTTGAACAATCTGACTTTACAGTCACAGTGTAAATTACAATATTCTGTTACTTTTCTAGAACATTGAAACTGCAATGCAATAAAGTTACactacatattaaatatac

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-234 No description available

Ensembl:

ensembl_id ENSDARG00000035797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019618 False 840 mRNA 0.41 5 18142127 18151343
TCONS_00019619 True 1406 mRNA 0.37 5 18150136 18153001

Neighbor

gene id symbol gene type direction distance location
XLOC_009824 rorc coding upstream 54103 17913936 ~ 18088024 (+)
XLOC_009823 them4 coding upstream 343715 17763848 ~ 17798412 (+)
XLOC_009822 si:dkey-87o1.2 coding upstream 422335 17714664 ~ 17719792 (+)
XLOC_009821 NA coding upstream 471670 17669300 ~ 17670457 (+)
XLOC_009820 NA coding upstream 475196 17665762 ~ 17666931 (+)
XLOC_009826 NA coding downstream 349565 18502566 ~ 18512199 (+)
XLOC_009827 rxrbb coding downstream 381833 18534834 ~ 18572875 (+)
XLOC_009828 slc6a19b coding downstream 821063 18974064 ~ 18998549 (+)
XLOC_009829 si:ch211-254p10.2 coding downstream 860017 19013018 ~ 19023116 (+)
XLOC_009830 rapgef5b coding downstream 876296 19029297 ~ 19151800 (+)
XLOC_009819 NA non-coding upstream 540227 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 non-coding upstream 571193 17570810 ~ 17570934 (+)
XLOC_009817 NA non-coding upstream 591068 17548791 ~ 17551059 (+)
XLOC_009831 NA non-coding downstream 1222633 19375634 ~ 19412421 (+)
XLOC_009832 NA non-coding downstream 1227865 19380866 ~ 19381292 (+)
XLOC_009833 NA non-coding downstream 1355737 19508738 ~ 19513991 (+)
XLOC_009837 BX005389.4 non-coding downstream 1533712 19686713 ~ 19715210 (+)

Expression


Co-expression Network