XLOC_009828 (slc6a19b)


Basic Information

Item Value
gene id XLOC_009828
gene name slc6a19b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18974064 ~ 18998549 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019623
TCTAGCCCATCAGAGACTGAGCCACCGGAGATCATGAAGCTGAAGCTGGTGCTGCCGAACCCGGGTCTTGAGGAGCGGATCTTGAACCATGAGGCGCTGGAGAGGCTGGAGGTGGAGGAGGCTGGAGACAGACCCAAGTGGGACAACAAAGCCCAATACATGCTGACCTGCGTGGGCTTCTGTGTGGGGTTGGGCAATGTCTGGCGGTTCCCCTACTTGTGCCAGAGCCATGGAGGAGGTGCCTTTATGATTCCTTTCCTGATCCTGCTGGTTTTTGAGGGAATCCCTCTTCTCCATCTGGAGTTTGCCATCGGGCAGCGACTGAGGAAAGGCAGTGTGGGTGTCTGGAGGACTATTAACCCATATATGCTTGGAGTTGGCATTGCATCTATGTGTGTGTCTTTTCTGGTCAGTCTGTACTACAACACCATCATAGCCTGGGTTATGTGGTATTTCTTCAACTCCTTCCAGGATCCTTTGCCCTGGAGCCAGTGCCCCATCAATGAAAACAGAACAGGACCGATTCCAGAGTGTGGGAAGAGCTCACCAGTGGATTATTTCTGGTATCGTGAGACTCTGAACACTTCAGCGGCTATAGATGATACGGGTGGTCTGCAGGTGTGGATGGTCCTCTGTTTGATCTCTGCATGGGCAGTGCTGTATGTCTGCTGCATCCGTGGAATAGAAACCACTGGGAAGGCGGTATATGTGACGTCTACGTTACCGTATTTGGTTCTTACGATCTTCCTGATTAGAGGACTCACTCTGAAAGGATCCGTTGATGGAATTAAATTCCTCTTTACTCCAGATataAACGAGCTGGCAAACCCTAGCACATGGCTGGATGCTGGTGCACaagtgttttattcattttctctAGCTTTTGGAGGTCTCATCTCTTTTTCCAGCTATAACTCTGTGCACAATAACTGTGAGCAAGATGCAGTAATCATCTCTGTCATTAATGCGTTCACTTCCATCTATGCGGCCACTGTCATTTACAGCATAATTGGTTTCAGAGCCACAGAGAGATTTGATGACTGTATGAATGGGAACATCTTGACTCTTCTGAACACATTTGACCTGCCAGAGGGGTTCATCAATCAAAGCAACTATCAAGATGTTTTTCAGAGCCTTAATTCTACAAGCCCTGACATAATCAGCAGCCTTAGCCTTAAGACCTGTGATCTGAACAACTTCCTCAGTGAGGGTGTAGAAGGAACGGGTCTTGCCTTTATTGTGTTCACTGAGGCAATCACCAAGATGCCACTGTCTCCACTCTGGTCCGTCCTGTTCTTCATTATGCTCTTCTGCCTTGGCTTGTCCTCCATGTTTGGCAACATTGAGGGTGTTCTGGTTCCCCTGCAGGACCTAGGGGTCTTCCCCAAAAGCTGGCCTAAGGAAATTATTTCAGGTGTGACGTGCTTGGTGTGCTGTCTGGTTGGGCTGATATTTGTCCAGGGCTCAGGAAACTACTGGCTGGCCCTATTTGACAGCTTTGCTGGCTCTATTCCTCTCCTCATTATTGCTTTCTCCGAGATGATTGGAGTTGTATACGTTTATGGCATTGACAGGTTCAATGAAGACCTGATATTCATGATAGGACACAAACCTAACATCTTCTGGCAAGCCACATGGAGATTCATAAGCCCTCTCATCATGTTGGCCATCTTCGTTTTTTACTTTTCCACCACAGTCACCAAGGAAATCTTTTACAGCGCTTGGGATCCTGAATCGGAAAATTTCCCAACTCTAGAGAAGAAGCCATATCCAACATGGATCTACGTAATAATATTTCTGCTGGCTGGGGTTCCTAGTTTGGCTGTACCAGGAACTGCTGTTTTCAGAGCCATTCGAGACTATTGCTGCAAAAAACATCCCAGTGCTTCAATTCAACAACTAGATTCTGTATCTTACAAAGTTCAAATGCATGATGAAGAAGTGAAGACACAAAAGACTGAGAAATTTGACCAAAAGTTGTATACATGAGATCTAACTGAACCTGCTATGCCATAATTTTAGGCCCACACATACATAAATGTCTTTCTGGAATTGACAGATTATTGCTATAATATTTGCCCTTGAAAATGTGCTTGCAAAATGTTACAGTGGTTTCAACTTCCAGTTTCCAATTTtccattaaaatttaatttaccaACAGTACACAGATAAAGCTAAGACACTAAATTAGGGCTTACTGGATTAGAgagattaatatatttttaattggttatatatcatttaaaatatatgcaattttatacacattttaagaAATAAGAAAAGATAAAAAGTAATGATGATAAGAAAACTGTGTGGCTAATTTGATAGTGGTACGTGGCAGACAtgtttttgtgctttaaaatattgataagcgtatttatttttgtaacaaaTAATGGCATTTAATTGGACTTTTTAATGTTTCACCCAATCAGTCTTCCTCAAAAAATATGTTCTGATAAAGGATTTTGGCCATGTTTCCCGACGAGTTCAATAAATATTTGTCTATGCCTATAAATTTGGTTCATTTAATCA

Function

symbol description
slc6a19b Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Hartnup disease and iminoglycinuria. Orthologous to human SLC6A19 (solute carrier family 6 member 19).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4755 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in floor plate; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Hartnup disease and iminoglycinuria. Orthologous to human SLC6A19 (solute carrier family 6 member 19).

Ensembl:

ensembl_id ENSDARG00000056719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019623 True 2538 mRNA 0.43 12 18974064 18998549

Neighbor

gene id symbol gene type direction distance location
XLOC_009827 rxrbb coding upstream 401189 18534834 ~ 18572875 (+)
XLOC_009826 NA coding upstream 461865 18502566 ~ 18512199 (+)
XLOC_009825 si:dkey-17m8.2 coding upstream 821063 18142127 ~ 18153001 (+)
XLOC_009824 rorc coding upstream 886040 17913936 ~ 18088024 (+)
XLOC_009823 them4 coding upstream 1175652 17763848 ~ 17798412 (+)
XLOC_009829 si:ch211-254p10.2 coding downstream 14469 19013018 ~ 19023116 (+)
XLOC_009830 rapgef5b coding downstream 30748 19029297 ~ 19151800 (+)
XLOC_009831 NA coding downstream 377085 19375634 ~ 19412421 (+)
XLOC_009832 NA coding downstream 382317 19380866 ~ 19381292 (+)
XLOC_009833 NA coding downstream 510189 19508738 ~ 19513991 (+)
XLOC_009821 NA non-coding upstream 1303607 17669300 ~ 17670457 (+)
XLOC_009820 NA non-coding upstream 1307133 17665762 ~ 17666931 (+)
XLOC_009819 NA non-coding upstream 1372164 17600877 ~ 17601900 (+)
XLOC_009818 FP015958.1 non-coding upstream 1403130 17570810 ~ 17570934 (+)
XLOC_009837 BX005389.4 non-coding downstream 688164 19686713 ~ 19715210 (+)
XLOC_009838 BX005389.1 non-coding downstream 705875 19704424 ~ 19704538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_07445055_07456795 SLC6A19B coding CI01000016 null 7445055 ~ 7457431 (+)