G226292


Basic Information

Item Value
gene id G226292
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 3036602 ~ 3046783 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU256738
ATTAGATCACAGAAACACTCCCTCGCAGGGTCTGAATGCAAGCCCTGCTCAAAGACTGTTAAGCAGGAGGACACGTACGCTCCTCCCAACACACAGCAATCTGTTGAAGCCAAAAGTAGTAGACACCACACAAGGACTGAGACTAAATCAAAGACGACAGGAAATGTACTACAACAGACACACAAAAGACATGAACATCCTGAAACCAGGTGACCAAGTGAGAGTACAACTAACACAGGCACAAAAGGTTTGGCAGAAAGCAACAGTTCTGGAACCGGTTAACAAACGATCATACAGGGTTGAACTGGACAGTGGTGGTGTTCTGAGGAG
>TU256740
ATTAGATCACAGAAACACTCCCTCGCAGGGTCTGAATGCAAGCCCTGCTCAAAGACTGTTAAGCAGGAGGACACGTACGCTCCTCCCAACACACAGCAATCTGTTGAAGCCAAAAGTAGTAGACACCACACAAGGACTGAGACTAAATCAAAGACGACAGGAAATGTACTACAACAGACACACAAAAGACATGAACATCCTGAAACCAGGTGACCAAGTGAGAGTACAACTAACACAGGCACAAAAGGTTTGGCAGAAAGCAACAGTTCTGGAACCGGTTAACAAACGATCATACAGGGTTGAACTGGACAGTGGTGGTGTTCTGAGGAGGAACAGAAGGTACCTCAGACACACTGGCCATCAGGGTCAGGTCACGAAACAAGAACAGTTTGCGG
>TU256741
ATTAGATCACAGAAACACTCCCTCGCAGGGTCTGAATGCAAGCCCTGCTCAAAGACTGTTAAGCAGGAGGACACGTACGCTCCTCCCAACACACAGCAATCTGTTGAAGCCAAAAGTAGTAGACACCACACAAGGACTGAGACTAAATCAAAGACGACAGGAAATGTACTACAACAGACACACAAAAGACATGAACATCCTGAAACCAGGTGACCAAGTGAGAGTACAACTAACACAGGCACAAAAGGTTTGGCAGAAAGCAACAGTTCTGGAACCGGTTAACAAACGATCATACAGGGTTGAACTGGACAGTGGTGGTGTTCTGAGGAGGAACAGAAGGTACCTCAGACACACTGGCCATCAGGGTCAGGTCACGAAACAAGAACAGTTTGCGGAGAACAACAGGCAAAAGGAGCATTGTGTTCTGCCAAATAGTGACACCAAACCTACTGTCACAACCAGAGCAGGTCGGATTAGTGTACACAGTATTTAAGGGACTATGTTACTTAGTTAAACATGGACTGATTCTTACAGCCTCTCTTTTTAATATAAGAACTGACGTGTTTTGCAGGCTGAGAAAAGACTGTCTTTAAATCTAAAGCCTAAATTAGAAGGAAAAAAAAAAATAATAATAAAAGAGGGGAGGGGG

Function

NR:

description
PREDICTED: 3'-5' exoribonuclease 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256738 False 330 lncRNA 0.46 2 3036602 3046464
TU256740 False 395 lncRNA 0.47 2 3036602 3046529
TU256741 True 649 TUCP 0.43 2 3036602 3046783

Neighbor

gene id symbol gene type direction distance location
CI01000053_02999291_03000591 NA coding upstream 35671 2998835 ~ 3000931 (+)
CI01000053_02989765_02990808 TSKU coding upstream 44433 2989765 ~ 2992169 (+)
CI01000053_02958353_02962208 SERPINH1, SERPINH1B, HSP47 coding upstream 73785 2958353 ~ 2962817 (+)
CI01000053_02891966_02895382 HSPA13, STCH coding upstream 140964 2891328 ~ 2895638 (+)
CI01000053_02645463_02689522 SYNRG coding upstream 347080 2645463 ~ 2689522 (+)
CI01000053_03068131_03069156 NA coding downstream 21509 3068038 ~ 3069249 (+)
CI01000053_03088253_03119757 DHX36 coding downstream 41724 3088253 ~ 3119882 (+)
CI01000053_03227130_03234740 CD151, CD151L coding downstream 180601 3227130 ~ 3234740 (+)
CI01000053_03318431_03325229 NA coding downstream 270693 3317222 ~ 3325513 (+)
CI01000053_03405451_03427728 PDCD5.S, PDCD5 coding downstream 358523 3405052 ~ 3428148 (+)
G226261 NA non-coding upstream 22800 3011663 ~ 3013802 (+)
G226253 NA non-coding upstream 28224 3007182 ~ 3008378 (+)
G226284 NA non-coding upstream 39548 2996727 ~ 2997054 (+)
G226216 NA non-coding upstream 162437 2873914 ~ 2874165 (+)
G226200 NA non-coding upstream 191111 2844813 ~ 2845491 (+)
G226257 NA non-coding downstream 33375 3079904 ~ 3080151 (+)
G226332 NA non-coding downstream 138985 3185514 ~ 3185723 (+)
G226376 NA non-coding downstream 264911 3311440 ~ 3666951 (+)
G226424 NA non-coding downstream 417687 3464216 ~ 3473595 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 441135 2592558 ~ 2595467 (+)
G225952 NA other upstream 1163307 1872874 ~ 1873295 (+)
G226347 NA other downstream 225845 3272374 ~ 3274911 (+)
G226399 NA other downstream 574269 3620798 ~ 3697529 (+)
G227317 NA other downstream 1368422 4414951 ~ 4415593 (+)
G228257 NA other downstream 2329024 5375553 ~ 5378449 (+)
CI01000053_05471449_05512831 LRRC75B other downstream 2462715 5471449 ~ 5513074 (+)

Expression


Co-expression Network