XLOC_009853 (hoxa10b)


Basic Information

Item Value
gene id XLOC_009853
gene name hoxa10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20910186 ~ 20913003 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019666
AGGGCAATCTTCTTCCACCGTCAAATTATACCACAAAGATGTCATGCTCCGATAGTCCATCTGGAAATTCGTTTTTGGTAGATTCTTTGATCCACGGAAGGTCCGAGGGAAGTGGACACTACTACCAAAACAGCGGAGTTTACTTGCAGCCGACCTCCGAATATTCTTATGGACTGTCTAACTGTGGCTATTTTTCGGGACTCAAGCGGAACGAGAGCAACTCGCAAAATGTAGTACCTACATGTGGTCCATATCAAGGCATGGAAACATGGTTGGAGACGTCGAGGTCCTGTCGCATTGAACAGCCTAACAACCAAATTACCCCACGGTCGTTCTCGCCCACCATAAAAGAGGAAAACTCTTACTGCTTATATGAGTCTGAGAAGTGCCCAAAAGAAACCATTACAGAGGATATATCGTACTCGCGGCTGACACCAAACTCATGTCCATCTAGCAACAATAACGGCTGTGTTCCGGTGCCCGGTTACTTCCGTCTGTCTCAGACATGCACCACATCTAAGGGTTTTACAGACAACCAGACTATACCGACTCATGTAGTGGCTCAACGTTCAACTCGATTTGACAGCTCTCTTTCAGCTATAGCAGCCGAAGCAAGCCGGGACGAGAGCGACGAGCCCCCCACATGCGCACCATGTGCCCCGGGAAGAAACAAGGAGCTAAGGGGGTCCACTGGCACCGCTTCATCTCCAGAACCACCGGACAGCCCGGAGAAGGCGGTCACTGTAACTAAAGCAGGAGATTCCAAAAGTGAGAGTACAGCTAACTGGCTGACGGCGAAGAGTGGCCGCAAGAAGCGTTGCCCTTACACCAAACATCAGACATTAGAGCTGGAGAAGGAGTTTCTCTTCAACATGTACTTGACACGAGAACGTCGCCTCGAGATTAGCCGCAGTGTTCACCTCACAGACAGACAAGTCAAAATATGGTTTCAAAACCGACGGATGAAGCTGAAGAAGATGAGTAGAGAAAACCGAATCCGCGAGTTGTCAGCCAACTTCAGTTTTTCATGAAGCGTCTAGCTTTATAGATCTCTGGCGCCCTCCTCCATCAGCTGCAGTGGTAGTCTACTTGCATCCAACCGTCTACGTAGATGTGTGCATATATGACTTGTGCAAGATACTATTGATAACTTATTGTGTGTCGTATACTGTTGACGtttttatatgtttatgtataattttatttgacAACCCAGTCGTCATAACATGTCATGGTTATTTATAAACTGTCAAGAGCACTTCACTGTAAAGCAAGAGAGGAAAATATCGAATGCTAAAGGTGTTCATTGTACATAGCATTCTGATTATAttgtacatttattgtatataaatGCGATATTTGCATGttgtaataataactattatgaaTCGATTTTTAAATAATAACGTTTGTTTATAAGTACGACCTTGTCATGTATTTGCTGTTCTGGGCATAATTGGAGGAGTCCAATTctttaaaatgtagaaatgtgTATAATTGCAGACACGACGGAATTCCTGTATTAGACTATTACCAGCATCCAAATGTACCATCTTTCTGGAAATACAGGCCGAGAAGATGGACTCGGGTGTAAAATAAATATACgtgacagaaaataaataaaggcatGTACATGAAAATCATCATAA

Function

symbol description
hoxa10b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; chondroblast; mesenchyme; myoblast; and pectoral fin bud. Orthologous to human HOXA10 (homeobox A10).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-97 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; chondroblast; mesenchyme; myoblast; and pectoral fin bud. Orthologous to human HOXA10 (homeobox A10).

Ensembl:

ensembl_id ENSDARG00000031337

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019666 True 1649 mRNA 0.43 2 20910186 20913003

Neighbor

gene id symbol gene type direction distance location
XLOC_009852 hoxa11b coding upstream 2808 20904754 ~ 20907378 (+)
XLOC_009851 hoxa13b coding upstream 12350 20895904 ~ 20897836 (+)
XLOC_009850 hibadhb coding upstream 20670 20871015 ~ 20889516 (+)
XLOC_009849 jazf1b coding upstream 109688 20738740 ~ 20800498 (+)
XLOC_009848 NA coding upstream 214669 20684940 ~ 20695517 (+)
XLOC_009854 mir196d coding downstream 410 20913413 ~ 20913484 (+)
XLOC_009855 hoxa9b coding downstream 2316 20915319 ~ 20917584 (+)
XLOC_009856 hoxa2b coding downstream 13670 20926673 ~ 20929183 (+)
XLOC_009857 skap2 coding downstream 21350 20934353 ~ 20977706 (+)
XLOC_009858 BX571678.1 coding downstream 103817 21016820 ~ 21055136 (+)
XLOC_009847 NA non-coding upstream 378414 20530125 ~ 20531772 (+)
XLOC_009840 CU855688.1 non-coding upstream 1101069 19805021 ~ 19809117 (+)
XLOC_009837 BX005389.4 non-coding upstream 1194976 19686713 ~ 19715210 (+)
XLOC_009859 NA non-coding downstream 228045 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 721384 21634387 ~ 21634836 (+)
XLOC_009866 NA non-coding downstream 961392 21874395 ~ 21877421 (+)
XLOC_009868 NA non-coding downstream 1109288 22022291 ~ 22113936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08299340_08301616 HOXA10B coding CI01000016 null 8299340 ~ 8301616 (+)