RNA id: TCONS_00019666


Basic Information

Item Value
RNA id TCONS_00019666
length 1649
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_009853
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20910186 ~ 20913003 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGCAATCTTCTTCCACCGTCAAATTATACCACAAAGATGTCATGCTCCGATAGTCCATCTGGAAATTCGTTTTTGGTAGATTCTTTGATCCACGGAAGGTCCGAGGGAAGTGGACACTACTACCAAAACAGCGGAGTTTACTTGCAGCCGACCTCCGAATATTCTTATGGACTGTCTAACTGTGGCTATTTTTCGGGACTCAAGCGGAACGAGAGCAACTCGCAAAATGTAGTACCTACATGTGGTCCATATCAAGGCATGGAAACATGGTTGGAGACGTCGAGGTCCTGTCGCATTGAACAGCCTAACAACCAAATTACCCCACGGTCGTTCTCGCCCACCATAAAAGAGGAAAACTCTTACTGCTTATATGAGTCTGAGAAGTGCCCAAAAGAAACCATTACAGAGGATATATCGTACTCGCGGCTGACACCAAACTCATGTCCATCTAGCAACAATAACGGCTGTGTTCCGGTGCCCGGTTACTTCCGTCTGTCTCAGACATGCACCACATCTAAGGGTTTTACAGACAACCAGACTATACCGACTCATGTAGTGGCTCAACGTTCAACTCGATTTGACAGCTCTCTTTCAGCTATAGCAGCCGAAGCAAGCCGGGACGAGAGCGACGAGCCCCCCACATGCGCACCATGTGCCCCGGGAAGAAACAAGGAGCTAAGGGGGTCCACTGGCACCGCTTCATCTCCAGAACCACCGGACAGCCCGGAGAAGGCGGTCACTGTAACTAAAGCAGGAGATTCCAAAAGTGAGAGTACAGCTAACTGGCTGACGGCGAAGAGTGGCCGCAAGAAGCGTTGCCCTTACACCAAACATCAGACATTAGAGCTGGAGAAGGAGTTTCTCTTCAACATGTACTTGACACGAGAACGTCGCCTCGAGATTAGCCGCAGTGTTCACCTCACAGACAGACAAGTCAAAATATGGTTTCAAAACCGACGGATGAAGCTGAAGAAGATGAGTAGAGAAAACCGAATCCGCGAGTTGTCAGCCAACTTCAGTTTTTCATGAAGCGTCTAGCTTTATAGATCTCTGGCGCCCTCCTCCATCAGCTGCAGTGGTAGTCTACTTGCATCCAACCGTCTACGTAGATGTGTGCATATATGACTTGTGCAAGATACTATTGATAACTTATTGTGTGTCGTATACTGTTGACGtttttatatgtttatgtataattttatttgacAACCCAGTCGTCATAACATGTCATGGTTATTTATAAACTGTCAAGAGCACTTCACTGTAAAGCAAGAGAGGAAAATATCGAATGCTAAAGGTGTTCATTGTACATAGCATTCTGATTATAttgtacatttattgtatataaatGCGATATTTGCATGttgtaataataactattatgaaTCGATTTTTAAATAATAACGTTTGTTTATAAGTACGACCTTGTCATGTATTTGCTGTTCTGGGCATAATTGGAGGAGTCCAATTctttaaaatgtagaaatgtgTATAATTGCAGACACGACGGAATTCCTGTATTAGACTATTACCAGCATCCAAATGTACCATCTTTCTGGAAATACAGGCCGAGAAGATGGACTCGGGTGTAAAATAAATATACgtgacagaaaataaataaaggcatGTACATGAAAATCATCATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-97 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; chondroblast; mesenchyme; myoblast; and pectoral fin bud. Orthologous to human HOXA10 (homeobox A10).

Ensembl:

ensembl_id ENSDART00000046766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019662 lncRNA upstream 22762 20871044 ~ 20887424 (+) False XLOC_009850
TCONS_00019660 lncRNA upstream 29981 20871015 ~ 20880205 (+) False XLOC_009850
TCONS_00019663 lncRNA upstream 35686 20873723 ~ 20874500 (+) True XLOC_009850
TCONS_00021920 lncRNA upstream 214669 20684940 ~ 20695517 (+) False XLOC_009848
TCONS_00021708 lncRNA upstream 214669 20688916 ~ 20695517 (+) True XLOC_009848
TCONS_00021921 lncRNA downstream 228045 21141048 ~ 21142516 (+) True XLOC_009859
TCONS_00021922 lncRNA downstream 721384 21634387 ~ 21634836 (+) True XLOC_009862
TCONS_00019681 lncRNA downstream 785992 21698995 ~ 21703320 (+) False XLOC_009863
TCONS_00019683 lncRNA downstream 786086 21699089 ~ 21703817 (+) False XLOC_009863
TCONS_00019684 lncRNA downstream 786092 21699095 ~ 21703511 (+) False XLOC_009863
TCONS_00019665 mRNA upstream 2808 20904754 ~ 20907378 (+) True XLOC_009852
TCONS_00019664 mRNA upstream 12350 20895904 ~ 20897836 (+) True XLOC_009851
TCONS_00019661 mRNA upstream 20670 20871021 ~ 20889516 (+) False XLOC_009850
TCONS_00019659 mRNA upstream 109688 20738740 ~ 20800498 (+) True XLOC_009849
TCONS_00019656 mRNA upstream 394380 20496691 ~ 20515806 (+) False XLOC_009846
TCONS_00019668 mRNA downstream 2316 20915319 ~ 20917584 (+) True XLOC_009855
TCONS_00019669 mRNA downstream 13670 20926673 ~ 20929183 (+) True XLOC_009856
TCONS_00019670 mRNA downstream 21350 20934353 ~ 20977701 (+) False XLOC_009857
TCONS_00019671 mRNA downstream 34436 20947439 ~ 20977706 (+) True XLOC_009857
TCONS_00019672 mRNA downstream 103817 21016820 ~ 21055136 (+) True XLOC_009858
TCONS_00019658 other upstream 405321 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 605911 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 739358 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019642 other upstream 1205648 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019630 other upstream 1781715 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019667 other downstream 410 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019682 other downstream 786003 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019718 other downstream 2484798 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 2694228 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 2924917 23837920 ~ 23854611 (+) False XLOC_009892

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_08299340_08301616.mRNA True 996 mRNA 0.50 2 CI01000016 8299340 ~ 8301616 (+)