CI01000054_02868603_02911589 (CDK6)


Basic Information

Item Value
gene id CI01000054_02868603_02911589
gene name CDK6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2868444 ~ 2911805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02868603_02911589.mRNA
ATTTATGGTTTAGGATACATATCTGTTATCTTAAGTGCGTAGATAAGCTTTGATTTAACTCTGATCATTGGTGTTTACCTCTGCCTCCTTTTGTGCTCGCGCTCTACAGGCAGTGCACGTGCCAGCGCCGCTCTCCCAATAATGCCTTTGTGAAATATCCGCGCGCTCGTCACGTTTCGGGATTCCCCGCAGTACCTCGCCGTGTGAGAAAAAAAAATGGACAAAGAGAGCTTAACCCAACAATATGAGCCGGTGGCTGAGATCGGCGAAGGTGCATACGGAAAGGTGTACAAAGCACGGGATTTGAAGAACGGGGGCCGCTTTGTAGCCCTGAAAAGAGTTCGGGTGCAGACCGAGGAAGAGGGAATGCCGCTGTCAACTATCCGCGAGGTGGCGGTGCTGAGGCAGCTGGAGTCCTTTGAGCATCCCAATGTGGTCAGGAGAGTTCTTGCAGCTAATGGACTGATGGCTCGGTTTGAAGGGCTTATCTACTTCATTCAATTGATGACAGAACTCACGTCATTGGCTGACCTAACTCAAGGCCTTAACCTTGCCATGGAGCATTGCGCACTAAAAGCTGCTGAACATGTGCACTTCATTCTTTTGACTAGACTAGACAAGAGACTTCATTGTGGAGGCACAATCTGGATTCCAGCAAAATCGTTTCCTGGAGAAGTTCAGTTTATGATGTCATGGGATCGGCTCTGGCGTTCACCAAAGATTGGCCAGAGGAATGTTCCTTCAGTGTATGTGTGCATGCAAAGGGTTTGTACCCACCGCATGCTAATTGATGAGAGAGGCCCCGGGAATCAAATGAGCTGGAAGGAGATCAAGCGGCTGGCCCTGCGTTGGGGAGTGCGGCTAGGCTCTCCGGCCCCGCGCCTTCCCGAAGCCTGTCTCTGGCCCATAAAGGAGAGCCTAATGAAGCATGGGGAAGGAATTACACTAACGCTAACTGGCAGATGTCCTGCATTGTGCCGGGGCAGAACGAGACTATTCACAATTAGCTGTGATCCCGGAACAGCTGCAGGGAAGCGGAGGCCTACAGGGATGGAGCCTTACGGCAGCGTGTCTTTCCTGCTTAGCCGTCATGATATGATGTACCAGCTGCTGCAGGGTCTGGATTTCCTCCACTCTCACCGTGTGGTTCATCGAGATCTTAAGCCTCAAAACATTCTAGTCACCAGTGGAGGACAGATCAAGCTGGCTGATTTTGGTCTGGCGCGGATCTACAGCTTTCAGATGGCTCTTACTTCTGTGCTTGACAGAGAAGGGCCACAGTCCAACAAACTGATAATGCAATTAACGGTCCACTCCATCTGTCCTCTCATTAAGCACGTCTGGTCAGATTTGCAGTCGGAGACTCACGCCTCTTCTAATCTGTCCTGGATGCAGGCTGTTGCAGATGATAATCATTGTGATGTTCAGCTGAATCCATCCAGATTTTTTTTAGACCGGTCTTGGTTTGAGCTGAGCGCAGCAGCTTGTTCGTTGCCAGACAATGTGCTTCTGCTTTGGACAGACTCAGAGGCAGCGGCATGTCTGGAAAAAGGAAAACATGGCACGCAGGAGAGCACGTGCGGCACACTTTGGGAATGTTTAGATATCTCCCCCGGTATTCCAAAAAGGAGAAAGGAAGAGGAAAAAAAATCCAGCGGAAAAAGCGGGGGGCTTCCAAACACCAACAGACACACAAAGAGTGCAGCAGCACAATGTACGGGGAGCGTCTTATTTGAGAGGGCCCCATACAGCATTCCTGTTGTAACGTTATGGTATCGAGCTCCCGAGGTGCTGCTTCAGTCCAGCTATGCTACTCCTGTGGATCTGTGGAGTGTCGGCTGCATCTTTGCTGAGATGTTCAGACGCCGCAGTTATATCCATTCAAGTGTTTGGTTTCCACTCTTTAAAGCCATGTGCCATAAAAACGCCACTGTGCTGGGCTCCTGGCATGCCTCCATTAGTGCCTGGGGGTGGGAGGGAAGCCTTTGCCCAGGCATAATGTCTGCCTTGTGCAGAAAGCCACTAATTCATTCAAACTACCAAGTAGCCCAAGGAAAGGGCGACATCTGGTGGTGGCAGGGGAAATTGCAAGCGCAGTTTTTGCAGCTTATTCAAAGACTTGACTATGGAAATGATTTAATATGTGGTGTGTTTTGGAGACTGAGCCCTGTGCTTGTGGCTCCTGGAATTTGTGTGCATGCCAAGGGAAGCATGCCCGCCCACGGGTGTCCTAACTGGCCTGAAGCCACAGGCACCAGTAGCAGTCCAGGCGGCCCTCTTTTCCGTGGGAACTCTGATGTTGACCAGTTAGGCAAGATTTTTGATGTGGTTGGGGTCCCTTCTCCAGAGGACTGGCCACAGGAAGTGGGTTTGCCCCAGAGTGCCTTTTCCCCTCGCCCTCCCCAGCCCATAGAGGACCTGGTGCCTGACATGGATGAGCTGGGCAAATCACTTTTACTTCGTTTCCTGTCATTTAACCCCTCCAGAAGGATATCAGCTTATGATGCACTGTCTCACCCATACTTCCAGAGTCTTGACAGCACCAGCAAGAGTCTGTACGCCCAACCCTTCCCCAGCAAAAAGCCCTCCCTGGAGGAGAGAGCTGCTTGAAAGACATGATTTCCCACTGTAGACACAGACCCCCATCCGGTCCCCCCTCCTTTGAACTAGTCTTCCATAGCATAACGTCACATGCTGCTTTTAGAAATATCACCGCAACTATTGGTCGATCGTATTTTTTCTTTGCCCTCACTACTGCCAGCTAATACA

Function

symbol description
cdk6 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within cell dedifferentiation; phosphorylation; and regulation of cell population proliferation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brain; gill; gonad; kidney; and retina. Human ortholog(s) of this gene implicated in high grade glioma; lung non-small cell carcinoma; pancreatic adenocarcinoma; pancreatic ductal carcinoma; and primary autosomal recessive microcephaly 12. Orthologous to human CDK6 (cyclin dependent kinase 6).

NR:

description
cyclin-dependent kinase 6

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K02091 CDK6; cyclin-dependent kinase 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02868603_02911589.mRNA True 2769 mRNA 0.51 18 2868444 2911805

Neighbor

gene id symbol gene type direction distance location
CI01000054_02857402_02860451 NA coding downstream 7993 2857402 ~ 2860573 (-)
CI01000054_02840361_02849268 NA coding downstream 19176 2839832 ~ 2849268 (-)
CI01000054_02825786_02828251 NA coding downstream 40193 2825753 ~ 2828251 (-)
CI01000054_02709494_02814598 VPS50 coding downstream 53544 2709489 ~ 2814900 (-)
CI01000054_02611877_02612240 GNGT1 coding downstream 256050 2611672 ~ 2612394 (-)
CI01000054_02985381_02988122 NA coding upstream 73555 2985360 ~ 2988161 (-)
CI01000054_02999099_03015534 NA coding upstream 86975 2998780 ~ 3015534 (-)
CI01000054_03018229_03030984 NA coding upstream 106271 3018076 ~ 3030984 (-)
CI01000054_03032517_03047094 ZMYM4 coding upstream 120021 3031826 ~ 3047094 (-)
CI01000054_03049995_03054032 NA coding upstream 138059 3049864 ~ 3054032 (-)
G230913 NA non-coding downstream 1804 2863400 ~ 2866640 (-)
G230999 NA non-coding downstream 172484 2695624 ~ 2695960 (-)
G230997 NA non-coding downstream 174006 2694209 ~ 2694438 (-)
G230978 NA non-coding downstream 252971 2613035 ~ 2615473 (-)
G230977 NA non-coding downstream 284624 2583331 ~ 2583820 (-)
G231001 NA non-coding upstream 5430 2917235 ~ 2917797 (-)
G230922 NA non-coding upstream 6222 2918027 ~ 2979454 (-)
G230910 NA non-coding upstream 38976 2950781 ~ 3043844 (-)
G231003 NA non-coding upstream 144923 3056728 ~ 3056940 (-)
G231004 NA non-coding upstream 178179 3089984 ~ 3090270 (-)
G230923 NA other downstream 30762 2837237 ~ 2837682 (-)
G230178 NA other downstream 1638309 1185533 ~ 1230135 (-)
G230908 NA other upstream 145843 3057648 ~ 3063343 (-)
G231645 NA other upstream 1070042 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1758346 4670151 ~ 4681361 (-)
G232274 NA other upstream 2294394 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3716277 6628082 ~ 6642160 (-)

Expression


Co-expression Network