CI01000054_02999099_03015534


Basic Information

Item Value
gene id CI01000054_02999099_03015534
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2998780 ~ 3015534 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02999099_03015534.mRNA
ATGGTACTACCAAATGCAGGTGTTTTTATGGCCAGTGAGGATTCCACAGGACATCCGGACACGTACCAGGGTAGAGGAGCGGAAAAGGGCAATACACTAGACCACAACAGAGAATTAAAAAAGAGTGTACTGGGACACTATGAGCATAAGAAGGAAGCCACTGAATCAGAGGAGAACAAGGACAGAGATATTAACGCAGAGGACATGGCACAGTGTTCGGAAGAGCTTGTGATCACTAAAGTTGAGGACTGCACGAATGAAATGGCAGTGGACCAGAATGAGGATTATAATGGGAAGATGGAAGTGGATGGACCAGCAGATTTGGAAACAAAGAAAGCCAAAGACGTAAAAGCCAAGACAAAGGAATCTGCTGCACTAACGATCAAGGATGAACCAATGGATGAAGAGTGGAAGAAAGCACCGCAGTCTCCAATGAGAAACATTAAGGATGATGAGGATTTTGACCAAAGCCCTGATGTCAAGATTCAAGCTGCATTGCCTGTTGGAGTAAATACTTCCACTGCATCCATCGGTATAAGCATTACAGTGGTTTTGTCATACATACATCATGGTAAACATCCTTCAAACAGGATGAAAAAAAAAACCCCACCTTTTTGCGTGAGATTTTCCTTTAAGGGTCTAAAGTCAGTTCCTGCATTCTTACATTGTCCTCTTCATGTCACAGGAGCTCCAGTAGGCGTCCCAGCAAAAGCACCATCAATCCCAGCTGAATCTGTTCAACCTTTTAATCGGCTTGGTGTGCTATGCACAGCCTGTAATAAGGTCATGCTGAAGGGACAGACGGCATTCCAGCGCAGTGGCTCTTCTAAACTCTACTGCTCACCTGCATGTCTCTGCAACAGCAAGACGAAAACATGTCACTCCTGCCATAAAGAGATTCGTGACCAGCATAACACTATAATTGGCCCGGTGGACATGTTAGGGACTGTGAAGGACTTCTGCAGTCAGAAATGTTTCAGTGCTTTAAACTTCAAGTGCAGCGTGTGTCAGAAGACAGGAGTGACTCGTCACGAAGTGAACTTCATGGGCTCTGTCCATAAACTGTGCAGTGACAGCTGCTTCAACCAGTTCCGCTCCTCCAATAAGCTGAACATGAGCAGCTGTGAGAACTGTGGTGGATACTGCTATGGCACAGACAGTCAGTGTCCGTCTTTGCGGATGGAGGACAGAGTTATGAAGTTCTGCAAACAAAACTGCCTCACAGCCTTTAAACAGAAGAGCCTGAAACTTGTCAGCTGCAAAATGTGTCATACTCTGCGCCCGGCTGCAGATGCGGTGGACAGTCCCAACTCGGAGGGCATCAGGGAGCTTTTCTGCTCCACTTCCTGTGTTACGGCGAGTAAAGGCCAGACCAGTTCGTCAGGTATTCCTGTGGAATGCAACAACTGCAAGCTGAAACTAGTGCCTCAGTACCACATAGCCATGTTTGATGGATCCGTTGAGAACTTCTGCTCTTTTTCCTGTGTACTAGCATATAAGGAATCTTTCAGTAAGACAAAACCTAACAACCAGGTGAACAGGGTAACATCTTCAAGCAACAACACATCTACCCCAAAACCTGCTGCTCCCAAACCTGCTTCAACAGAGTCTAGCTCCTCAACAAAGACTAGCGCTCCCAGTGATCAGGGCCAAACAGTCACCAAAATCCCCTGCTCTCAGTGTCTGAACTCATTCTTCCACAAACCAGAGCTGCTGGAGTTCAAGAGGAAAATGTATGCTTTCTGCGATAATGATTGTATTGATGAGTTCAGAAGGATCAACAACGCGGTGGCTCGCTGTGAATACTGCAAGCTCAATAAAACTGTGAAAATAGTGAGAAGGATAAACAAGTTTGACCGTTCTTTCTGCAATGAGAGATGCAAGTCACTCTTTGAGCATGACCTGGTCAAGCGGTGGGGGAAGAAACACTGTCGCAACTGCTTCTACTGTGGCAGCACCTCAAAGACTGTGGTGACTGAGGTCTTTGATGGCAAGCAAGAGGAGTTCTGTGGGAACGATTGCTTGTTAAAACATCGTTTATTAATCCGTCAGGAGATAAAGTGCTCCATGTGCAGGCAGGCCAAGAAAATGACAGAGACCGTGAACTGGCTGGGTGAGATGAAGCATTTCTGCAGCCTGCGGTGCCTGATGTTCTTTTGCAGTCTGCAGGGCGTCACTGGAGCCATCATCAAAGCTACAAGCAAATCTGTTGCCACACAGAGTGCGACTTCAGTATCCTCTGCAGTCCCTCAAAGTGCTAAAGAGGGCACACCGGTCATTGCCAGTGTTGTTTCACTTTCAAATGCATCTAACAAACAGCCAGGTGTTCACAGAAACACAGATCCGAAAGGCTCTGTTCCAGCTCCAGCTAAAGTTATCGAGCAAAAACGTGCTGCGAAAGCTCCTGTCTCGTCATCCCAAATCCTGAAGAACAAGGAAATAACATATAAACCCATAAGCAAAAACAAAGCCACGTCCTGTAAACCCCACACCACTGATGCTGAGACACAGATAGATGAAACGCCTAAAGTGATAGTGCTGCCTGTGCCGGTGCCAGTCTATGTGCCAGTTCCCATGCATCTCTACAGCCAATACGTTCCACAGTCTGTAGGGATTCCACTTCCGGTTCCAGTGCCGTTGTTCTTCCCCACGACTCTGGACAGCGCTGAGCACATCGTGAAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGATCCTCTGGAGGCTGACCTCCTCATGATGGCGGAGATGGTGGCTGAGGATACAGAAAGGGAGAAACACACCACATCTAGTGATCAGACTGGTAACATTATGGAGGACCTTGATTTTGAAGCCCTATCCAGCAATTTGAGTTGGGAGGAGGACTCTGTGTCTTCTGCTCAGACATGGGATCAACCCCCAGAGCCTGAAAGGCCTCTTCCGTCCAGTTCTGCCACACAAATCCCCATCTCTACCGCAGCAGAAGAGCCACAGATGGACCTGGAGGCTGATTTCCCAGTTGAAAGCATTGAACTTCTCAGAGAGCAAACACAAAAAGACACTGATTCTGGCAAACGAAGATCTCGCAAGAGAGGAAACGATGGCTTCCCTCTGAAGAAAAAGGGTCATAAATGTGCATCAGCGCTTCCCCACAACCTCTCCAAACTGCAACACGAGTACGGCGTCAATGCCTGGAAGGACTGGGTCCGCTGGAGGAACGCCCAACCCAACATGGAGGCTCCCAAATTTGGCACACATACTATGACAATAAAGGAGGACCTGTTGAAGTGTTGCACGGCTGAACTCAGCTATGGCCTCTGTAAGTTCATCTCTGAAGTTCGTCGACCCAACGGAGAGAACTACAGCCCTGACAGCATCTTTTACCTCTGCTTGGGCATCCAGCAGTACCTGTTTGAAAACAATCGGATGGAGAACATCTTCTCAGATGTCTTCTACACCAAATTCTGCCATGAAATGAGCTACATACTCAAAGGATGGAAACCAACTATTTTGCCCAGTGGTTACATTCATTCTCGTGTGGAGGAGGAGTATCTGTGGGACTGTAAGCAGCTGGGAGCATTTTCACCTGGTGTGCTGCTCAACACGTTGCTGTATTTCTTCACCAAGTTCTTCAACTACAAGACTGTGGAGCAGCACCGTTGCCTCTCTTTTGCAAATGTCAAACGCTACTCTCGGGGTCCAGCTAACTGCAAAGTATCCTACCTGCGTTTCTACCCCCCGAAAGAGGACGCAAGCATGGATGGTGTCCCTGTAAAGAAGAGGAAGAAGGAAGATGAACGGCAAAGGATGCTAAAGATACGGCAGAATTCAGACAATCCTCTCCGCTGTCCCGTCAAGCTATACGAGTTCTATCTCTCAAAATGCTCACCAGGCGTAAGACAACAAGCGAACCAATTCTACCTGAGCCCAGAGCGCTCCTGCGTACCCAGCAGTCCTACATGGTTTACAACCACCTCGTTGAGCGATGAGGCTCTGGACAGCATGCTCACACGCATCCTTACTGTCAGAGAGCTGCACCTGGAGACGGAAAAAACACCCAACGAGACCGATTCAGACAGCGACTCTGACTTCAGACAATTTTAATACAGCAAAACTGAGAACCTGAACACATCCTCTGGGATATTGACTGTAGTTCTGAATGTCGGAAAGCAAGCAGTTTATTATTGTTCATCCTTGTTAACTACAAGAATATTGTAAATGGAAAGCGCGCAGTTAAACACCAGTGGGATTGCTGTGAGTCGCAGAATTTGTATTATATTTCAACACTAAAGACATTGACAGCATCATTCCAAACTGATTTTGAAGTTGTTGTTCTTCATTGTAAACCATGTTGGTCCATATAGATTGGAATGTTCCTGAAATTAAGGAAGACTTTTTTTTTTTTTTTTTTTAATGGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02999099_03015534.mRNA True 4405 mRNA 0.47 27 2998780 3015534

Neighbor

gene id symbol gene type direction distance location
CI01000054_02985381_02988122 NA coding downstream 10619 2985360 ~ 2988161 (-)
CI01000054_02868603_02911589 CDK6 coding downstream 86975 2868444 ~ 2911805 (-)
CI01000054_02857402_02860451 NA coding downstream 138329 2857402 ~ 2860573 (-)
CI01000054_02840361_02849268 NA coding downstream 149512 2839832 ~ 2849268 (-)
CI01000054_02825786_02828251 NA coding downstream 170529 2825753 ~ 2828251 (-)
CI01000054_03018229_03030984 NA coding upstream 2542 3018076 ~ 3030984 (-)
CI01000054_03032517_03047094 ZMYM4 coding upstream 16292 3031826 ~ 3047094 (-)
CI01000054_03049995_03054032 NA coding upstream 34330 3049864 ~ 3054032 (-)
CI01000054_03082593_03087260 SFPQ coding upstream 66814 3082348 ~ 3087545 (-)
CI01000054_03485424_03500327 NA coding upstream 469294 3484828 ~ 3500489 (-)
G230922 NA non-coding downstream 19326 2918027 ~ 2979454 (-)
G231001 NA non-coding downstream 80983 2917235 ~ 2917797 (-)
G230913 NA non-coding downstream 132140 2863400 ~ 2866640 (-)
G230999 NA non-coding downstream 302820 2695624 ~ 2695960 (-)
G230997 NA non-coding downstream 304342 2694209 ~ 2694438 (-)
G231003 NA non-coding upstream 41194 3056728 ~ 3056940 (-)
G231004 NA non-coding upstream 74450 3089984 ~ 3090270 (-)
G231010 NA non-coding upstream 100641 3116175 ~ 3116434 (-)
G231016 NA non-coding upstream 123786 3139320 ~ 3139613 (-)
G231096 NA non-coding upstream 196522 3212056 ~ 3258021 (-)
G230923 NA other downstream 161098 2837237 ~ 2837682 (-)
G230178 NA other downstream 1768645 1185533 ~ 1230135 (-)
G230908 NA other upstream 42114 3057648 ~ 3063343 (-)
G231645 NA other upstream 966313 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1654617 4670151 ~ 4681361 (-)
G232274 NA other upstream 2190665 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3612548 6628082 ~ 6642160 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location