CI01000054_06411594_06411984


Basic Information

Item Value
gene id CI01000054_06411594_06411984
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6411594 ~ 6412521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06411594_06411984.mRNA
GAGGTGCTGGAGCTGGCTTTCTCTGTCCTCTACGAGTCTGATGAGTATCTTAACTTCATTGCCCCTGACAAGCATGAGTACTGTGTATGGACAGATGGGCTGAATGCACTGCTGGGGAAGGAGATGACCAGTGAGTTCACTCGCTCAGACATGGACACTCTTCTCAACATGGAAATGAAGCTCCGCCTCCTGGACCTGGAGAACATCCAGATCCCTGAAGTTCCTCCCCCAATCCCCAAAGAGCCAAGCAATTATGACTTTGTTTATGACTGCAACTAATCCCCTTTCACTGGACTGACTGATTTTTCGTAAATGCATACTGGAAGAAAGACATTTACAAAAAGTTACAGAAATGAAAATAACGGAGAACTCTTTCCTGCTAAAACTTGGCTCTCTAATATGCCTCATCATAATGGATTTGCTGAACTTAATGGACTTGGCTTGCAAGGCCTATGAACCATCTGGTCTGGTTGAAGAACCACCACAAACTGGTCCTCAGGTCCTAAATCACTTTAGTCCTGTCGCAGTCATTTCCAGACATCTCTTCAAACAGTTTTACATTCCTCAAACAAGCCCACTTCTCTGGTTAAAAAATGGTTGTCAAGAATTTTCGTCCCATCATAATTTCTGGCTGTTCGGAGTGGGATGCTCCCTGTAGAGTGTGCAGAAAGTCTAGGGGATTGTGGCATGTAGCACTCACTGTAGTATGTTTCTCACTCCAACAAGCGGCAGCTATATTGCTAGCGAAGTCCAAGTTTGTTCTTAATGATTTCTCCAAGTATCCCATTCACGCCTCTTATACTGTAGACTGTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06411594_06411984.mRNA True 816 mRNA 0.44 2 6411594 6412521

Neighbor

gene id symbol gene type direction distance location
CI01000054_06305908_06312122 NA coding upstream 99431 6305908 ~ 6312163 (+)
CI01000054_06292147_06297237 NA coding upstream 114034 6291976 ~ 6297560 (+)
CI01000054_05989042_05989389 NA coding upstream 421799 5989042 ~ 5989795 (+)
CI01000054_05957906_05981499 ELP2 coding upstream 429372 5957399 ~ 5982222 (+)
CI01000054_05926683_05953807 CTNNAL1 coding upstream 457639 5926683 ~ 5953955 (+)
CI01000054_06434217_06435680 OTUD6B coding downstream 21235 6433756 ~ 6435680 (+)
CI01000054_06437628_06441214 NA coding downstream 25107 6437628 ~ 6441481 (+)
CI01000054_06756071_06757443 NA coding downstream 343288 6755809 ~ 6757514 (+)
CI01000054_06759472_06761310 NA coding downstream 346290 6758811 ~ 6761310 (+)
CI01000054_06789505_06789810 NA coding downstream 375841 6788362 ~ 6789946 (+)
G232501 NA non-coding upstream 64961 5918059 ~ 6346633 (+)
G232648 NA non-coding upstream 124515 6286265 ~ 6287079 (+)
G232606 NA non-coding upstream 275565 6134517 ~ 6136029 (+)
G232545 NA non-coding upstream 516627 5894748 ~ 5894967 (+)
G232539 NA non-coding upstream 521589 5889794 ~ 5890005 (+)
G232664 NA non-coding downstream 3142 6415663 ~ 6416211 (+)
G232674 NA non-coding downstream 16610 6429131 ~ 6429432 (+)
G232684 NA non-coding downstream 39337 6451858 ~ 6452068 (+)
G232689 NA non-coding downstream 47360 6459881 ~ 6460125 (+)
G232691 NA non-coding downstream 50506 6463027 ~ 6463256 (+)
G232659 NA other upstream 35700 6374850 ~ 6375894 (+)
G232558 NA other upstream 369731 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 786919 5608457 ~ 5634804 (+)
G231863 NA other upstream 1960864 4407152 ~ 4450730 (+)
G232870 NA other downstream 475391 6887912 ~ 6888503 (+)
G233024 NA other downstream 1155002 7567523 ~ 7609893 (+)
G233306 NA other downstream 1892078 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1893416 8325126 ~ 8329716 (+)
G235560 NA other downstream 3975615 10388136 ~ 10392378 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008236 elmo2,LOC106583331,LOC106565399 coding CM030123.1 CM030123.1 47642979 ~ 47676750 (-)