CI01000054_07978918_07980431 (SOSTDC1B)


Basic Information

Item Value
gene id CI01000054_07978918_07980431
gene name SOSTDC1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7978489 ~ 7980475 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07978918_07980431.mRNA
ATTCTCTGAATTTTCAAAGAGACACAGAACCGAACTCCTTTGCAATGCCCCTGAACACATGCGAATACCAGCTGCTGTTTCTGCTCTGTTTTCTGATGAAAAGCTGTCATGCTTTCAAAAATGATGCCACTGAAGAGTTTTATGGGCACATGGTCGCATCATCTCACGAGACTCCGAACAACGCCTCTTTAAATCGAGCGCGCAACGGAGGAAGACGAACGGAGAGCCGAGACCAAAACGAACAGCACCAGGTCGGTTGCAGGGAACTGAGGTCCACTAAATACATATCTGACGGCCAGTGCACAAGCCTGAATCCCGTGAAGGAGTTAGTGTGTGCCGGAGAATGCCTACCCACCCACTTGCTGCCCAACTGGATCGGTGGAGGTCACTACTGGAGCAGACGGGATGCCCAGGAGTGGCGCTGCGTCACTGATCGCACACGCACCCAGCGCATTAAACTCCAGTGCCAGGATGGCAGCACGCGCACCTACAAGATCACTGCTGTCACATCCTGCACATGCAAAAAATACACACGCCAAAACAACGAGTCCTCTCATGCACCTCAGAGTCCCTCAAAGGATCATCCACTGCAGAACCCCAGGAAGAAAAAAAGCAAAAATAAAAACTTAAAGGTTAATTCTAAAAATGAATAGAGCCTCTCATTGATTGAGAATGAGCTATACTGGTACAGATTTGACCAACACAACCCTGCTCATGGAAGGAATGGGACTATAGTATGAACTACTATGACACTGACTTGGATTGCAATGATGTACAGCTTACTATTTTCAGATTCTTTGATGACCATGCATAAATGTATGCATATGTGTGTGTATATGCACTTTTTGAGTGTAATATGGTTAATGTTTTGTACAAATAACCTGATTACAAAAAGCAATTATGTATACGACTACATTTGACACAAAAGTTGAGGGGAAAAAACGATAACTATAGCTATGTAAATATTTGCATTTCATATGTACTAGTTTTTGAATAGAAATACATCTATTTTTATATAATAGTTGTTTTATGAATATTTCAAGTTGACATTTACACAGTTAAATACACATTTATACAATAAA

Function

symbol description
sostdc1b Predicted to enable BMP binding activity. Predicted to be involved in negative regulation of BMP signaling pathway and negative regulation of Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SOSTDC1 (sclerostin domain containing 1).

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07978918_07980431.mRNA True 1082 mRNA 0.42 2 7978489 7980475

Neighbor

gene id symbol gene type direction distance location
CI01000054_07936687_07947936 MEOX2B, MEOX2 coding downstream 30553 7936471 ~ 7947936 (-)
CI01000054_07874540_07894985 NA coding downstream 83167 7874244 ~ 7895322 (-)
CI01000054_07793409_07805739 TMEM55A coding downstream 172750 7793199 ~ 7805739 (-)
CI01000054_07737375_07747797 TMEM64 coding downstream 230692 7737254 ~ 7747797 (-)
CI01000054_07723457_07725732 ACOT13 coding downstream 252757 7723408 ~ 7725732 (-)
CI01000054_07985093_07994157 NA coding upstream 4328 7984803 ~ 7994931 (-)
CI01000054_08021522_08026014 NA coding upstream 40468 8020943 ~ 8026014 (-)
CI01000054_08032736_08043035 NA coding upstream 51910 8032385 ~ 8043316 (-)
CI01000054_08091223_08096443 YARS coding upstream 110122 8090597 ~ 8096443 (-)
CI01000054_08099220_08112291 NA coding upstream 117200 8097675 ~ 8112291 (-)
G234167 NA non-coding downstream 77709 7900538 ~ 7900780 (-)
G234065 NA non-coding downstream 141649 7836063 ~ 7836840 (-)
G234131 NA non-coding downstream 143868 7834072 ~ 7834621 (-)
G234129 NA non-coding downstream 145787 7832492 ~ 7832702 (-)
G234128 NA non-coding downstream 147134 7831113 ~ 7831355 (-)
G234207 NA non-coding upstream 50420 8030895 ~ 8031398 (-)
G234210 NA non-coding upstream 58924 8039399 ~ 8039797 (-)
G234220 NA non-coding upstream 140703 8121178 ~ 8121700 (-)
G234268 NA non-coding upstream 230595 8211070 ~ 8211278 (-)
G234298 NA non-coding upstream 303797 8284272 ~ 8284602 (-)
CI01000054_07165957_07169539 HEYL other downstream 806816 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1324476 6628082 ~ 6642160 (-)
G232274 NA other downstream 2769249 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3306256 4670151 ~ 4681361 (-)
G231645 NA other downstream 3995666 3981847 ~ 3982823 (-)
G235216 NA other upstream 1267564 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1502672 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1882846 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2823396 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2890629 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014136 sostdc1b coding NC_007130.7 CM002903.2 31061718 ~ 31063020 (+)