CI01000054_07793409_07805739 (TMEM55A)


Basic Information

Item Value
gene id CI01000054_07793409_07805739
gene name TMEM55A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7793199 ~ 7805739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_07793409_07805739.mRNA
CAGCACATAAAGAGATGGATGATCCCCGACAGCTGAGTGAGGTCATGGGGCCAGAGCTGCTGTCAGTTGTTTTTGCTGTGGTGTCACATGTTCAATATGGCTGCACCGAATTACCTCCACCCTACACAGCCATTGCCAGTCCAGATGCAGGGGGAGTGCCTGTCATTAATTGTCGAGTGTGCCAGTCTCTTATCACTCTGGATGGCAAACTCCATCAGCATGTGGTGAAGTGTACCGTCTGCAATGAAGCCACGCCTATAAAAAATCCACCAACAGGAAAGAAGTATGTTAGATGTCCTTGCAACTGCCTGCTAATCTGTAAAGACACGTCTAGGAGGATAGGATGCCCTCGGCCCAACTGCAGACGGATCATCAACCTGAGCCCTGTGATGGTGATCCCAGAGGAGCAGCCCGCCCAGCCAGCTCTACCAGTCCAGCCTGAGGGCATGCGTGTGGTCTGCGGCCACTGCGGCAACACATTCCTTGGAAGCGATGATGAGTGGTCCCAGTCTGCCTCAGGCCTGGCTATTCGCGGCCCCTCTGATCTTTTCAAGTGGATGGAGCTCCGATTCAATACACTGGCCAAGTGCCCACATTGCAAAAAAATCTCTTCTGTAGGCAGTGCTCTACCCAGAAGGCGCTGCTGTGCCTACATTACAGTAGGAATGATCTGCATTTTCATTGGTATCGGTTTAACGGTGGGCACTCAGGACTTCGCCAGGCGTTACCACGCTACTTACGTGTCCTGGGCCTTCGCATATCTCCTGGGTCTCATCTGTCTGGTACGAGCCTGCTATTGGGGAGTGATTAAAGTCAGCTATCCAGAGAACACCTTTGCATAGACAAGACAAAGCGTCCATCCTTCAAGTCCTTTAGTGTTTGTTTTTCTCTTGATCTGAACAGGTTAACCGTTGGATGCTTAGTCCTGTTACAAGAGTTTAAGAATCCAGGGGATTTAGGTACCTTCAAATGTTTTCAGATTGAGTTATTGATTAGCTCTTATATTTCTCTTACTGATTTGAACCCGCAATATGATTACTTGAGGAATTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_07793409_07805739.mRNA True 1052 mRNA 0.49 8 7793199 7805739

Neighbor

gene id symbol gene type direction distance location
CI01000054_07737375_07747797 TMEM64 coding downstream 45402 7737254 ~ 7747797 (-)
CI01000054_07723457_07725732 ACOT13 coding downstream 67467 7723408 ~ 7725732 (-)
CI01000054_07712126_07718933 GMNN coding downstream 74266 7712035 ~ 7718933 (-)
CI01000054_07642350_07658894 NA coding downstream 132684 7641800 ~ 7660515 (-)
CI01000054_07607425_07611037 STMN2A, STMN2B, STMN2 coding downstream 182162 7606500 ~ 7611037 (-)
CI01000054_07874540_07894985 NA coding upstream 68505 7874244 ~ 7895322 (-)
CI01000054_07936687_07947936 MEOX2B, MEOX2 coding upstream 130732 7936471 ~ 7947936 (-)
CI01000054_07978918_07980431 SOSTDC1B coding upstream 172750 7978489 ~ 7980475 (-)
CI01000054_07985093_07994157 NA coding upstream 179064 7984803 ~ 7994931 (-)
CI01000054_08021522_08026014 NA coding upstream 215204 8020943 ~ 8026014 (-)
G234101 NA non-coding downstream 41784 7751205 ~ 7751415 (-)
G234066 NA non-coding downstream 56687 7734655 ~ 7736512 (-)
G234097 NA non-coding downstream 85840 7706096 ~ 7707359 (-)
G234071 NA non-coding downstream 89033 7700875 ~ 7704166 (-)
G234057 NA non-coding downstream 155224 7637502 ~ 7637975 (-)
G234120 NA non-coding upstream 10492 7816231 ~ 7818263 (-)
G234126 NA non-coding upstream 23147 7828886 ~ 7829138 (-)
G234128 NA non-coding upstream 25374 7831113 ~ 7831355 (-)
G234129 NA non-coding upstream 26753 7832492 ~ 7832702 (-)
G234131 NA non-coding upstream 28333 7834072 ~ 7834621 (-)
CI01000054_07165957_07169539 HEYL other downstream 621526 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1139186 6628082 ~ 6642160 (-)
G232274 NA other downstream 2583959 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3120966 4670151 ~ 4681361 (-)
G231645 NA other downstream 3810376 3981847 ~ 3982823 (-)
G235216 NA other upstream 1442300 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1677408 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2057582 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2998132 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3065365 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014140 pip4p2 coding NC_007130.7 CM002903.2 31404686 ~ 31431027 (+)