CI01000054_08272679_08293481


Basic Information

Item Value
gene id CI01000054_08272679_08293481
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8272519 ~ 8295165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08272679_08293481.mRNA
ATCCCTGTCTCTTCTTTTAACATCCCAGCTCGATCAGGTCTCAAACAAGCGTCTGATCTCTCTTGACCTCACATCCACTGTTACTGAAGTAGAATATTTCTTATTCTTGTTCTTTCTGTACAAAAAAAAATCACTCTCTTAATCACTTACAACCTTAACTTACAAAAAGTACTTTACAATTAATAGAAACCAAAATAAATAGATAGATAGATAGATAGATAGATAGATACTCATAGGTGAAGCAAATTTTGTTGATTATCTCCTAACAAGGTCACTTGTCGAGATCTGGGTAGATTAGATGGTAAGCAAACAATCAGTTCTCGTAATCAACGTGTTGGACGCAGGAGAAATGGGCAGGAGTCCTGACTGACCTGACCAACTTTGACAAGGGCCAAATTTTTATGGTCAGATGACTGGGTCAGAGCATCTCTGAAATGGCAAGGCTTGTATGTTGCTTGTATGTTGCTCCCGATCATTTACCAACAGTGTTCCAAGGAGGCACAAACTGTCAACAGGTTGTTGGGCGTTCAGGGTTCACTGGTTGCACGCAGGGCAATGAAGGCTATCCCATCTGGTCTGAGCCAAAAGAAGGTCTACTGTGGCACAAGTCACACTATTGTCGAAAGTACCTACAATGGGTACGCGAGTGTCGGAACTGGACCTTGGAGCAATGGAAGAAGGTCGCCTGGTCCAATGAGTCATGTTTTCTTTTACATCACTTGGACGGCCGTTTACCTGGGGAAGTGATGGCACCAGGATGCACTGTGGGATGACGACAAGTCGGTGGAAGGAGTGAGATGTTCTGGGCAATGTTCTGCTGGGAAACCCTGGGTCCAGCCATTCATGTGGACGTAAATTTGACCGACCTTGACGTACTGCCTACCTAAACATTGTTGCAGACCAGGTACACGCCTTCACGACAATGGTGATCCCTTGTGGAAGTGGCCTCTTACAGCAGGATAATGCACCCTGCCACCGTGCACACATAGTTCAGGAATGGTTTGAGGAACACGATAAAGAGTTCAAGGTCTTGCCCTGGCCCCCAAATTCCCCAGATCTCAATCCAACTGAGCATCTGTGGGATGGGCTGGACCAACAAGTTCGATCCACTTTGGTTCCATCTCGCAACCTACAGGACTTGAAGGATCTGCTGCTAACGTCTTAGTGCCAGACACCACAGGATACCTCTTGTGGAGTCCATGCCTTGGTGGGTCGGCGCTGTTTTGGCAACACATGAAGGACAGACAGTATAATAAGACAGGTGGTCATAATGAAATGATCTGGATATGTTCTTTTTACAGTATTAATTATATTATATTATAATCAAGTATTACCATCTGATACCATCATCTGGCCATGGTACTACTCTAGTGCTTTTTGTAAGGGATATAGCTGCAAAAATGATAGATAAAATTATTCAGTTGTTATTTTAAACTTTGAAAACACATTTCACATGACAAAAAATGGTAAAAAACAAAACAAAAAAAGGGTACCACAATGTCTTAGTGATTGCAAAAACAAAATATACTACAGGAGGGGCTCCAACATTCATCTAGAGATGCTACAGGTGTTTTCAACATTGCCCCAATAACAGGTGGTGTGTGTCTCTGTATTTTGTGTGCGCATATGTGTAGGTTTGCACACAGGCCAGCTGGCTTCTAGCAGGCCTGACCACAGGCTGACCATGGATGTGTGTCCATGTTGTGAGGAGGAAGGGAAGGTGCCTCAGATTAGCACTTCAAAGGCACAAGAGCCCAGTGTGGAGATTAAAGCCCAGCGTGTATCAAAGCCCCTCAGATCTGATAGAGAGATGCATCTAATGCGCTTCAAATGGGTCAGCTCCAGTACAGTCAATACAGTGAGAAAACTCAATACCTCTAAACTGCATACAGCAGAATCTACAACAAAAGTCATTAAATACACTATTCAAAGAGCGGCGGTCCCCCTGCCTACCACTGAGAGCTGGTACGGCCCCTTCTCCCGCTCTTTCTCAATGCATTTTTCCCTTATATGGAGAGAGTGAGAGCAGTGAGAGGGATGAGCGAGAGTGTAGCTGGACCATACCATCTGCTCACGTTTTAAGGGGGTGTTCAGAGGAGCTGTGTAAGAGTAAGGGGAGGTGGAGGGGGCAAGTGATGGAGATGGTGTGAATAACGCCACCTCTTTGAGTGGCCCCGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08272679_08293481.mRNA True 2183 mRNA 0.45 4 8272519 8295165

Neighbor

gene id symbol gene type direction distance location
CI01000054_08228712_08238666 FAM49A, FA49A coding downstream 33853 8228661 ~ 8238666 (-)
CI01000054_08099220_08112291 NA coding downstream 160228 8097675 ~ 8112291 (-)
CI01000054_08091223_08096443 YARS coding downstream 176076 8090597 ~ 8096443 (-)
CI01000054_08032736_08043035 NA coding downstream 229203 8032385 ~ 8043316 (-)
CI01000054_08021522_08026014 NA coding downstream 246505 8020943 ~ 8026014 (-)
CI01000054_08353876_08358232 NA coding upstream 58211 8353376 ~ 8358232 (-)
CI01000054_08375424_08376756 NA coding upstream 79906 8375071 ~ 8376980 (-)
CI01000054_08400578_08406066 NA coding upstream 105366 8400531 ~ 8406066 (-)
CI01000054_08425960_08439362 NA coding upstream 130778 8425943 ~ 8439430 (-)
CI01000054_08574533_08590975 NA coding upstream 279315 8574480 ~ 8591292 (-)
G234268 NA non-coding downstream 61241 8211070 ~ 8211278 (-)
G234220 NA non-coding downstream 150819 8121178 ~ 8121700 (-)
G234210 NA non-coding downstream 232722 8039399 ~ 8039797 (-)
G234207 NA non-coding downstream 241121 8030895 ~ 8031398 (-)
G234167 NA non-coding downstream 371739 7900538 ~ 7900780 (-)
G234320 NA non-coding upstream 8849 8304014 ~ 8304462 (-)
G234321 NA non-coding upstream 9438 8304603 ~ 8304960 (-)
G234322 NA non-coding upstream 34300 8329465 ~ 8333698 (-)
G234347 NA non-coding upstream 136476 8431641 ~ 8431991 (-)
G234350 NA non-coding upstream 142411 8437576 ~ 8437778 (-)
CI01000054_07165957_07169539 HEYL other downstream 1100846 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1618506 6628082 ~ 6642160 (-)
G232274 NA other downstream 3063279 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3600286 4670151 ~ 4681361 (-)
G231645 NA other downstream 4289696 3981847 ~ 3982823 (-)
G235216 NA other upstream 952874 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1187982 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1568156 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2508706 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2575939 10871104 ~ 10881495 (-)

Expression


Co-expression Network