CI01000054_08353876_08358232


Basic Information

Item Value
gene id CI01000054_08353876_08358232
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8353376 ~ 8358232 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08353876_08358232.mRNA
ACAACCGAGTTTCACTTAAATGACAACTGTAGGACCCTGAGCAGTGCATCATGGGCCTTGGCTCCTCCAAACAGTCTACGATATCTGTCTATTAAACCGCCATCCTTGTCCCATCCTTTCCACCATGCATGCCAGCCAAACCGAGCGGCCAACCTAGAGGAGGAGGATTGGGAGGAGGCTGTCAGCTTGTGCGTCCTGCTCAAACCCGGTGAGACCAATGAGCAGCACACTGTGGTGGAAGTGCCCTTTGTTGGGCCGGCCAAACTAAGTGAGCTCCTTGCCTTGGGACCCATCAGACCCTTTGACTTGCTTTTTCCTTTAACCACTGTTGATGGGAGCAGAGAGGATGATATTAGCATTACCGGAAAGGTAGGGACAGACACAGAGAGAGGTTCCTTTAGGAGTCTCTTTGAGACCGAGGGATGCCCTGCGCCGTTTATGTTGGGATCTCGCTTCTTTTGCTTTCACTGCCCCGGGATGAAGTCTGTCTCTGAGAATGGGGACAAATCAGGAAAGGAACAGGATGAGCAGAGCTTCTATCCAGCCCTCCATGTCACACATTGCAGCCATGCTGAGACTGAGAGAGTGGACAACAGTTCTAGCCAGAGAGACATGGAGAATGAAGAGAAACTGGCCCTGATGTATGAAAAGCTGAGGGTGGAGCTGCCCAGTTTCTTTGTGAAAAATCATGACTACAGCATATACTCTGAAGATGTTGAGTTCATCAATGGTCTTCTGAACACAAAGACAAGGGGTCGTGTAGTGTACCAGCTGACTCTGACGGTTTGGCGATTAATGTGTCTGTGTTACTATGCGGATGCTCAGCTGGAAGTGCTGAAGCTGACCAAGCATCCAGAAGATGGCTCCATCAAAGCTCGCTGGAGAGTCAAAGGCCTCCCCTTCCACTCCATTCTGGTATTCTTCTACAAGAAAGACAAGAGCCATCTCTATAGAACATATGATGCATTCTCCACCTTCTATGTTGGCTCTGATGGACGAATACACCGCCATAAAGTTGAAAAGGTTATGGAGGCTCGTCCCCCCTTGCTGCCCAAAGTGACCTCAGTGCTGGCCGGGGCTCTGGTGGCCCTGGGCATTCAGGAACACCGGCCTGCCCTCAACCTGCTCCCACTCATACTGTCTTCCCTCCGACAGGCCCGAGCCTGAGCCAGATGTATGGATGTGTATGCTCAGAAGAACTTGTGTTTGGTCACACCATTAAAAAGACGCAGCGCTGTATTGTGTGGGTTGAGTGAATGAGATATTGGTAACCGTTTCTTTAGGGGGGAAATATTTGCAGGAACAAGAACAAACAAGTTAAAACTGTTCTCACTTGAAACAATCTTCTGTGTGCGCTCTTTTCCATTATTACTTTCCACCAAACTGATATCGGTTACCTCTACACTCTGGTTTGGATTGTAACAGGTTTCAGAGCCTAGCTAATATATACTCCACTAGCCAGTCATTTGAGCCATCACTAACTAGGAGGTTAAAAACGCACAACTCTTAACGGATGACCCATTACATTACTGTGTAAGTAAATTCAAGGCCATTTGTAAATATATTCAGGCAGCTCTGCTCAGACTGAGGCTGTAAAGCTGTACGGCTTTTAAGCACATGCCAGATAAAAGGGTTGATGAAGTTCTTCTCACATTGACAGTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08353876_08358232.mRNA True 1667 mRNA 0.48 5 8353376 8358232

Neighbor

gene id symbol gene type direction distance location
CI01000054_08272679_08293481 NA coding downstream 58211 8272519 ~ 8295165 (-)
CI01000054_08228712_08238666 FAM49A, FA49A coding downstream 114710 8228661 ~ 8238666 (-)
CI01000054_08099220_08112291 NA coding downstream 241085 8097675 ~ 8112291 (-)
CI01000054_08091223_08096443 YARS coding downstream 256933 8090597 ~ 8096443 (-)
CI01000054_08032736_08043035 NA coding downstream 310060 8032385 ~ 8043316 (-)
CI01000054_08375424_08376756 NA coding upstream 16839 8375071 ~ 8376980 (-)
CI01000054_08400578_08406066 NA coding upstream 42299 8400531 ~ 8406066 (-)
CI01000054_08425960_08439362 NA coding upstream 67711 8425943 ~ 8439430 (-)
CI01000054_08574533_08590975 NA coding upstream 216248 8574480 ~ 8591292 (-)
CI01000054_08652832_08667152 NA coding upstream 294557 8652789 ~ 8668929 (-)
G234322 NA non-coding downstream 19678 8329465 ~ 8333698 (-)
G234321 NA non-coding downstream 48416 8304603 ~ 8304960 (-)
G234320 NA non-coding downstream 48914 8304014 ~ 8304462 (-)
G234298 NA non-coding downstream 68774 8284272 ~ 8284602 (-)
G234268 NA non-coding downstream 142098 8211070 ~ 8211278 (-)
G234347 NA non-coding upstream 73409 8431641 ~ 8431991 (-)
G234350 NA non-coding upstream 79344 8437576 ~ 8437778 (-)
G234351 NA non-coding upstream 80586 8438818 ~ 8439062 (-)
G234352 NA non-coding upstream 81445 8439677 ~ 8439959 (-)
G234353 NA non-coding upstream 82752 8440984 ~ 8441202 (-)
CI01000054_07165957_07169539 HEYL other downstream 1181703 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1699363 6628082 ~ 6642160 (-)
G232274 NA other downstream 3144136 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3681143 4670151 ~ 4681361 (-)
G231645 NA other downstream 4370553 3981847 ~ 3982823 (-)
G235216 NA other upstream 889807 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1124915 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1505089 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2445639 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2512872 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014121 si:ch211-215a10.4 coding NC_007130.7 CM002903.2 30450125 ~ 30468234 (+)