XLOC_009879 (efna1b)


Basic Information

Item Value
gene id XLOC_009879
gene name efna1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23282655 ~ 23298149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019711
TCTCCAGGCATTTAACCGCGTCTGTTTCTGAGAGACCCAAACAAAACCTGTTACTTGAGCAATTCGATTTAGTGTTTCTGAGATTCGTGCACTACAGTAGTGCATTTGCGTTTTCAACTTGCAAAAGAGTATTTTGCATTCGTGTGTATTCCTGTGAAGAGCTTTATTTCTATCCGGGACTCAATGGATTTTCTGTGGCTGCTGTGCGTCGCGGTGAGCGTCAGCGCCTGGTACGCGTCCGCCGAGCGACACAGTGTTTACTGGAACAGCACCAATGCAAATTTCCTCTGGGACGATTATACCGTCGATGTACGCATTAATGACTATCTGGACATCATCTGCCCTCACTATGCGCATGGCGAGATCGCTTCCCAGGAGGCAGAACGATATGTGCTGTACATGGTGGAGCTGGAGGACTATGAGAACTGCAAGCCGCATTCGTTTGATCAGCTGCGCTGGGAGTGTTCACGACCCTTCGCTCCTCACGCGCCCGAGAAGTTCTCCGAGAAGTTCCAGCGCTTTACACCATTCACTCTGGGAAAGGAGTTCCGCCAGGGCGAGAGTTACTACTATATCTCCAAGCCTCTCCACCATCATGGCCAGGAGTGTTTGAGACTGAAGGTGGATGTTGTTGGACCTCACGGTTCCAAGAACAAGAAGAAGATGGTGGAAAAAGTTGAAGAAATAGAGGGAAAGATGGCAGCTGGAGGAGTCCACAACCCATCCAACAGACTTCCAGCAGACGACCCTATTGCTATGATCCCGGTGGTGCAGAGGAGTGTTGGCAGTTCGGGTGTTAGTGTGGCTCCAATATCCAGTTTTGTCACATTACTCTCTGTATTCATCTGCCTGGTTCTCCACCAAGCTTCATAGAAGAAGGCTTTATGGACACTGGTCTGTTTGGACGCTAAAGACTTTAAAGCCGGTGCTGGATACTGGCTCTAAGAACTGATTTTATACGAAGAATTTTCTACAAACTGAAGTATTTTGGTGCTGGCGTGCATGTTGCTGAGTgacgtgtttgtgtttgtgagagTGACGTGACCAGAGAAAAGGTGTTTTTGAAGAACCTtctctctctttttgtttttttgaagagTATTTACAGTTCTGTACCCCATCAGCTCTTTTTATTTGACTCTTTGTACCTGTTCATTGTTTTCCTGGAAATCCATTATATTTACCAATGTGATTCAGAGCTAACCTTAAAAACTGGAGGTGTTTTCCATCGTTCTAACTGGATTTGTGATTAACACGGGTGAACACTAGGCTAGATGTTGTGTTTGATAGAGACCTTTGTTCTACTGTACCGATTTGAGCCAAAGATCACAAGAGTTATGGTAAAACTAACCCTGATCTTGCACCTTAAACAGAATTGATGTTCGTGTTTGTAAATCTAGACGAGTTTTCTAGCAGTgccattttctccctgtgttttcAATCTAGTGTTGCTGTAGTTTCAGTTGGTTTCTGTGATGTAATGTGAACACACCCTGCAAAATGTACTGGCACTAATGTATAGATGAGATCAgaattttgtttgcttttttattcaTGACACATTTGGTTTTGAACAGGAATGTTGGGttgtgctgtttgtgtttgtgagagTGAAGCTGGCCTTCTGACAGAAAGCACAACACGCACAAGCTACTCAAATGGTTGAATTTTCTTCAATAAGTTAAAGTTTCTATTGTAAAAAAGTTGTGTTTTGTACTGTATTGGTTTATAAACCTGTAAATAGTGCtgtaaaaatgtacatactgagagttatataaaataaagacatttgttaattataaaataaaa
>TCONS_00019712
CGTCAAGTGTCTGTTTTTGACTCATGTTATTCCTTAGGAGTGTCTTTGTTTCACTACATCACtgacagttatgttttgttttgtttttttctcttcctACAGTTTCCTCTGGGACGATTATACCGTCGATGTACGCATTAATGACTATCTGGACATCATCTGCCCTCACTATGCGCATGGCGAGATCGCTTCCCAGGAGGCAGAACGATATGTGCTGTACATGGTGGAGCTGGAGGACTATGAGAACTGCAAGCCGCATTCGTTTGATCAGCTGCGCTGGGAGTGTTCACGACCCTTCGCTCCTCACGCGCCCGAGAAGTTCTCCGAGAAGTTCCAGCGCTTTACACCATTCACTCTGGGAAAGGAGTTCCGCCAGGGCGAGAGTTACTACTATATCTCCAAGCCTCTCCACCATCATGGCCAGGAGTGTTTGAGACTGAAGGTGGATGTTGTTGGACCTCACGGTTCCAAGAACAAGAAGAAGATGGTGGAAAAAGTTGAAGAAATAGAGGGAAAGATGGCAGCTGGAGGAGTCCACAACCCATCCAACAGACTTCCAGCAGACGACCCTATTGCTATGATCCCGGTGGTGCAGAGGAGTGTTGGCAGTTCGGGTGTTAGTGTGGCTCCAATATCCAGTTTTGTCACATTACTCTCTGTATTCATCTGCCTGGTTCTCCACCAAGC

Function

symbol description
efna1b Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; nervous system; optic vesicle; and periderm. Orthologous to human EFNA1 (ephrin A1).

GO:

id name namespace
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0005886 plasma membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041007-5 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; nervous system; optic vesicle; and periderm. Orthologous to human EFNA1 (ephrin A1).

Ensembl:

ensembl_id ENSDARG00000018787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019711 False 1809 mRNA 0.43 5 23282655 23298149
TCONS_00019712 True 687 lncRNA 0.49 4 23294686 23297206

Neighbor

gene id symbol gene type direction distance location
XLOC_009878 efna3b coding upstream 92772 23087326 ~ 23189883 (+)
XLOC_009877 flad1 coding upstream 401317 22864313 ~ 22881338 (+)
XLOC_009876 CR854942.1 coding upstream 491774 22761846 ~ 22790881 (+)
XLOC_009875 NA coding upstream 586159 22695226 ~ 22696496 (+)
XLOC_009874 chrnb2 coding upstream 604361 22618620 ~ 22678294 (+)
XLOC_009880 slc50a1 coding downstream 5710 23303859 ~ 23314878 (+)
XLOC_009881 krtcap2 coding downstream 27936 23326085 ~ 23392266 (+)
XLOC_009882 s100a10b coding downstream 99636 23397785 ~ 23399484 (+)
XLOC_009883 s100w coding downstream 105453 23403602 ~ 23406155 (+)
XLOC_009884 icn coding downstream 133040 23431189 ~ 23432552 (+)
XLOC_009872 NA non-coding upstream 703329 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 953627 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 955153 22323766 ~ 22327502 (+)
XLOC_009868 NA non-coding upstream 1168719 22022291 ~ 22113936 (+)
XLOC_009889 CR533578.1 non-coding downstream 309082 23607231 ~ 23607352 (+)
XLOC_009902 NA non-coding downstream 720959 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 900330 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 1217943 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 1267585 24565734 ~ 24573801 (+)

Expression


Co-expression Network