RNA id: TCONS_00019712


Basic Information

Item Value
RNA id TCONS_00019712
length 687
lncRNA type retained_intron
GC content 0.49
exon number 4
gene id XLOC_009879
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23282655 ~ 23298149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAAGTGTCTGTTTTTGACTCATGTTATTCCTTAGGAGTGTCTTTGTTTCACTACATCACtgacagttatgttttgttttgtttttttctcttcctACAGTTTCCTCTGGGACGATTATACCGTCGATGTACGCATTAATGACTATCTGGACATCATCTGCCCTCACTATGCGCATGGCGAGATCGCTTCCCAGGAGGCAGAACGATATGTGCTGTACATGGTGGAGCTGGAGGACTATGAGAACTGCAAGCCGCATTCGTTTGATCAGCTGCGCTGGGAGTGTTCACGACCCTTCGCTCCTCACGCGCCCGAGAAGTTCTCCGAGAAGTTCCAGCGCTTTACACCATTCACTCTGGGAAAGGAGTTCCGCCAGGGCGAGAGTTACTACTATATCTCCAAGCCTCTCCACCATCATGGCCAGGAGTGTTTGAGACTGAAGGTGGATGTTGTTGGACCTCACGGTTCCAAGAACAAGAAGAAGATGGTGGAAAAAGTTGAAGAAATAGAGGGAAAGATGGCAGCTGGAGGAGTCCACAACCCATCCAACAGACTTCCAGCAGACGACCCTATTGCTATGATCCCGGTGGTGCAGAGGAGTGTTGGCAGTTCGGGTGTTAGTGTGGCTCCAATATCCAGTTTTGTCACATTACTCTCTGTATTCATCTGCCTGGTTCTCCACCAAGC

Function

GO:

id name namespace
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0007411 axon guidance biological_process
GO:0005886 plasma membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0046875 ephrin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041007-5 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; nervous system; optic vesicle; and periderm. Orthologous to human EFNA1 (ephrin A1).

Ensembl:

ensembl_id ENSDART00000135279

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019708 lncRNA upstream 418591 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 598190 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 639599 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021710 lncRNA upstream 715360 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021926 lncRNA upstream 717532 22575143 ~ 22577154 (+) False XLOC_009872
TCONS_00021929 lncRNA downstream 514395 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019740 lncRNA downstream 616876 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019749 lncRNA downstream 650083 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 663703 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 682174 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00019710 mRNA upstream 104803 23087326 ~ 23189883 (+) True XLOC_009878
TCONS_00019709 mRNA upstream 172896 23087326 ~ 23121790 (+) False XLOC_009878
TCONS_00019704 mRNA upstream 413348 22864313 ~ 22881338 (+) False XLOC_009877
TCONS_00019706 mRNA upstream 415494 22865942 ~ 22879192 (+) False XLOC_009877
TCONS_00019705 mRNA upstream 422161 22864722 ~ 22872525 (+) False XLOC_009877
TCONS_00019713 mRNA downstream 6653 23303859 ~ 23314878 (+) True XLOC_009880
TCONS_00019714 mRNA downstream 28879 23326085 ~ 23392266 (+) False XLOC_009881
TCONS_00019715 mRNA downstream 34427 23331633 ~ 23392266 (+) False XLOC_009881
TCONS_00019716 mRNA downstream 86110 23383316 ~ 23388619 (+) True XLOC_009881
TCONS_00019717 mRNA downstream 100579 23397785 ~ 23399484 (+) False XLOC_009882
TCONS_00019682 other upstream 1591007 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2381202 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 2789821 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 2990411 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 3123858 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 100595 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 310025 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 540714 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 663665 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 1218886 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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