XLOC_009897 (apoa4b.2)


Basic Information

Item Value
gene id XLOC_009897
gene name apoa4b.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23947196 ~ 23948538 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019745
CACACTTGTTCCTCAACAGGACAGCGTCAATTAAAGCTAAGCAGCACAGACTAGCGGCTTCAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTAGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTACGCTGAAGACCTTAAAGAGAAGCTGGACCCCTATGCACAGAACCTGAAGGACCAGCTCGCTTCTCTGTACGAATCTTACACCAAGAGAAATTAAATGCTACCAACAGACTTTTGAAAACTGCTGCTATTGTAATTAGATCTTAGATAAAGTTCATCAAGAAAGTAGGTTTCTATGTGGTACATAgaatattactattactatctCCAGCTGACAATGTCCTGATG
>TCONS_00019746
ACACTTGTTCCTCAACAGGACAGCGTCAATTAAAGCTAAGCAGCACAGCGGCTTCAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTAGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTACGCTGAAGACCTTAAAGAGAAGCTGGACCCCTATGCACAGAACCTGAAGGACCAGCTCGCTTCTCTGTACGA
>TCONS_00019747
GTTCCTCAACAGGACAGCGTCAATTAAAGCTAAGCAGCACAGtcttttatttaCAGACTAGCGGCTTCAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGC
>TCONS_00019748
AGGACAGCGTCAATTAAAGCTAAGCAGCACAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTAGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTACGCTGAAGACCTTAAAGAGAAGCTGGACCCCTATGCACAGAACCTGAAGGACCAGCTCGCTTCTCTGTACGAATCTTACACCAAGAGAAATTAAATGCTACCAACAGACTTTTGAAAACTGCTGCTATTGTAATTAGATCTTAGATAAAGTTCATCAAGAAAGTAGGTTTCTATGTGGTACATAgaatattactattactatctCCAGCTGACAATGTCCTGATGGAAGTATTTATTCACAGCTATGACAAACACAACAATCCAgcaaaatgatttctgaagcattactttgaatttaaaaatattagaaataaatattttgtcaaaGGAAA
>TCONS_00019749
ttatttaaaatgaataaaagtcttttatttaCAGACTAGCGGCTTCAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAG

Function

symbol description
apoa4b.2 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3143 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDARG00000020866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019745 False 970 mRNA 0.49 4 23947196 23948431
TCONS_00019746 False 811 mRNA 0.52 4 23947197 23948278
TCONS_00019747 False 588 mRNA 0.50 4 23947203 23948042
TCONS_00019748 False 1046 mRNA 0.46 4 23947213 23948538
TCONS_00019749 True 617 lncRNA 0.50 3 23947289 23948093

Neighbor

gene id symbol gene type direction distance location
XLOC_009896 si:dkey-7f3.14 coding upstream 22351 23923746 ~ 23924845 (+)
XLOC_009895 apoa4b.2 coding upstream 24328 23921610 ~ 23922868 (+)
XLOC_009894 apoa4b.1 coding upstream 30933 23913943 ~ 23916263 (+)
XLOC_009893 gtpbp10 coding upstream 44757 23891443 ~ 23902439 (+)
XLOC_009891 si:dkey-7f3.9 coding upstream 111274 23811554 ~ 23835922 (+)
XLOC_009898 apoeb coding downstream 12206 23960744 ~ 23963461 (+)
XLOC_009899 apoc1 coding downstream 23588 23972126 ~ 23973721 (+)
XLOC_009900 apoa2 coding downstream 30440 23978978 ~ 23980354 (+)
XLOC_009901 apoc2 coding downstream 35641 23984179 ~ 23994642 (+)
XLOC_009902 NA coding downstream 70570 24019108 ~ 24028618 (+)
XLOC_009889 CR533578.1 non-coding upstream 339844 23607231 ~ 23607352 (+)
XLOC_009875 NA non-coding upstream 1250700 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1367870 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1618168 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1619694 22323766 ~ 22327502 (+)
XLOC_009903 NA non-coding downstream 249941 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 567554 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 617196 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 886237 24834775 ~ 24897111 (+)

Expression


Co-expression Network