XLOC_009895 (apoa4b.2)


Basic Information

Item Value
gene id XLOC_009895
gene name apoa4b.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23921610 ~ 23922868 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019741
ACACTTGTTCCTCATACAGGACAGCATCAATTAAAGCACACCAACACAGACTAAAAGTGAAGACCATGAAGGTTCTTGTGGTGCTCACACTTGCTGTGGTTACAGGCTGCCAGGCCAATATATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAATCCATTAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAATGTGAGAGATAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCCCTGGATTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTATGCTGAAGATGTGAAGGAGAAGCTGGACCCCTATGCACAGAACTTGAAGGACCAGCTCGCTTCTCTGTATGACTCTTTCATCAAGagaaattaaatgcattaaagaCTTCTCTTTTTTACCAAATTAACTCTTCACAAACTTCGAAATTTGACATATTTGATCCATGTTTTTTTCTATCGATTCATCCTATCATGCCATAAATTAAGTCTAGTTTCCTAAC
>TCONS_00019742
ATGAAGGTTCTTGTGGTGCTCACACTTGCTGTGGTTACAGGCTGCCAGGCCAATATATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAATCCATTAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAATGTGAGAGATAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCCCTGGATTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTATGCTGAAGATGTGAAGGAGAAGCTGGACCCCTATGCACAGAACTTGAAGGACCAGCTCGCTTCTCTGTATGACTCTTTCATCAAGagaaattaa

Function

symbol description
apoa4b.2 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3143 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDARG00000094929

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019741 False 960 mRNA 0.48 4 23921610 23922868
TCONS_00019742 True 768 mRNA 0.51 3 23921777 23922741

Neighbor

gene id symbol gene type direction distance location
XLOC_009894 apoa4b.1 coding upstream 5347 23913943 ~ 23916263 (+)
XLOC_009893 gtpbp10 coding upstream 19171 23891443 ~ 23902439 (+)
XLOC_009891 si:dkey-7f3.9 coding upstream 85688 23811554 ~ 23835922 (+)
XLOC_009890 rab13 coding upstream 111999 23796612 ~ 23809611 (+)
XLOC_009888 kcnn3 coding upstream 201961 23598908 ~ 23719649 (+)
XLOC_009896 si:dkey-7f3.14 coding downstream 878 23923746 ~ 23924845 (+)
XLOC_009897 apoa4b.2 coding downstream 24328 23947196 ~ 23948538 (+)
XLOC_009898 apoeb coding downstream 37876 23960744 ~ 23963461 (+)
XLOC_009899 apoc1 coding downstream 49258 23972126 ~ 23973721 (+)
XLOC_009900 apoa2 coding downstream 56110 23978978 ~ 23980354 (+)
XLOC_009889 CR533578.1 non-coding upstream 314258 23607231 ~ 23607352 (+)
XLOC_009875 NA non-coding upstream 1225114 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1342284 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1592582 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1594108 22323766 ~ 22327502 (+)
XLOC_009902 NA non-coding downstream 96240 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 275611 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 593224 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 642866 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 911907 24834775 ~ 24897111 (+)

Expression


Co-expression Network