RNA id: TCONS_00019741


Basic Information

Item Value
RNA id TCONS_00019741
length 960
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_009895
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23921610 ~ 23922868 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTTGTTCCTCATACAGGACAGCATCAATTAAAGCACACCAACACAGACTAAAAGTGAAGACCATGAAGGTTCTTGTGGTGCTCACACTTGCTGTGGTTACAGGCTGCCAGGCCAATATATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAATCCATTAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAATGTGAGAGATAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCCCTGGATTCTGAGACCCTGAAGGCCACTCTGCTCCAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTATGCTGAAGATGTGAAGGAGAAGCTGGACCCCTATGCACAGAACTTGAAGGACCAGCTCGCTTCTCTGTATGACTCTTTCATCAAGagaaattaaatgcattaaagaCTTCTCTTTTTTACCAAATTAACTCTTCACAAACTTCGAAATTTGACATATTTGATCCATGTTTTTTTCTATCGATTCATCCTATCATGCCATAAATTAAGTCTAGTTTCCTAAC

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3143 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDART00000143855

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019740 lncRNA upstream 6483 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00021929 lncRNA upstream 99864 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019712 lncRNA upstream 624404 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 1045515 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 1225114 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019749 lncRNA downstream 24421 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 38041 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 56512 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 61887 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019766 lncRNA downstream 61909 23984777 ~ 23991098 (+) False XLOC_009901
TCONS_00019738 mRNA upstream 5347 23913943 ~ 23916263 (+) False XLOC_009894
TCONS_00019739 mRNA upstream 5630 23914070 ~ 23915980 (+) False XLOC_009894
TCONS_00019737 mRNA upstream 19171 23891443 ~ 23902439 (+) True XLOC_009893
TCONS_00019736 mRNA upstream 46135 23837921 ~ 23875475 (+) False XLOC_009892
TCONS_00019734 mRNA upstream 48816 23837918 ~ 23872794 (+) False XLOC_009892
TCONS_00019743 mRNA downstream 878 23923746 ~ 23924845 (+) False XLOC_009896
TCONS_00019744 mRNA downstream 1172 23924040 ~ 23924617 (+) True XLOC_009896
TCONS_00019745 mRNA downstream 24328 23947196 ~ 23948431 (+) False XLOC_009897
TCONS_00019746 mRNA downstream 24329 23947197 ~ 23948278 (+) False XLOC_009897
TCONS_00019747 mRNA downstream 24335 23947203 ~ 23948042 (+) False XLOC_009897
TCONS_00019735 other upstream 66999 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 314258 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 522450 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2217931 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 3008126 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019751 other downstream 38003 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 593224 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 958254 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 975303 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 982688 24905556 ~ 24918957 (+) True XLOC_009913

Expression Profile

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