RNA id: TCONS_00019714


Basic Information

Item Value
RNA id TCONS_00019714
length 4727
RNA type mRNA
GC content 0.36
exon number 6
gene id XLOC_009881
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23326085 ~ 23392266 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAAGCCACTGATTTAGTTTGATATTCTGTAAAAACACTCAATTTCATGGTCTGTCTTTTGAAAACTCTTCTTGTCGTCGTTGTACTTCAGACCGAATAGTGAGATAAATGTGCCGAAGAAGCACTTTAAACTTCTGTTTGCTGAACTCTGAAAAACAGTAGTGTGTGTTTGCTGCATCAGCACACtggagtgtgtgtgcgcgcacgctgTCAGCTCATATGTTTCAGCTTTCAGCAAGTAAAACACACCTGTGAGAGCTCCAGCTGTTGTTTTGAAGAGCCCGAACAAGAGAAGCAGAGACAGGATAGAGCTGCAGAGTTTCTGCACCGCTGTCCGCTCTTGGCACTGCTTTTACACGTTAGCGGCGCGTCATCTTTACTCTGCTGGCACTGGAGCTGAATAGAGTGGAGTATAATCTCTTTCCCTCAGCTGCTTTCAAAAATGGCGGTGAACACAAGCACGTCTCTAGTGTTGTCCAGTCTGCTGTCGGTGCTGGTGTTTGCAGGAATGCAGATGTTCAGTCGACAGCTGGCTTCTTCAGAGTGGCTCACCATCTTGGGCGGCTTCCTGGGCTCCTTGTTGTTTATCTGCTCTCTTACTGCTTTCAATAACCTGGAGAACCTGGTCTTTGGCAAAGGCTTTCAAGCCAAAATCTTCCCAGAGATTGTCGTGTGCATGTTCCTGGCACTGTTTGCATCCGGTTTGGTGCATCGCGTTTGTGTGACAACATGCCTGATCTTCTCTGTCTTCGCACTTTACTACATCAATAAAGTGTCAGCAGCTCTTTACCAGGCAGCACCCGCTCCAATTCCAGCCAAACCCACCAGCAAGGGCAAAAGGAAGAATTGAAGCACTTTAGCCATCCCAGCACAATCACAGTCATCACAGCACTGTCTGCTAAAGCTACACAATCTGATGTGTTTGCCAACAGcacactgtcttttttttattcattccatTCAAACTTAAAAATGTGTAACAAATTTTGTCAAACCAGTCACAGATGTTTGGTTTTTGGTTCTGTTcgcaaaatatttttgtttaaggcGTTTGTTATTAAAAGTTGATTGAATCATCTGTCTGTCTGGtagttattattgatattatcgTTATCAAGTCAGTTTTCTTTAATAAGCCAATAATACATTCGTCAGGCAGTTTCTCTAGGACTTGTTAGTGCATTAATTGAACTGTAAAATGACTGCTTTTGTGACTGCTTTTTCTAATCTCATTGCAATACTTGTTTTAAATCCAGATTTTGCtatgaaaatacatacaaatctTGTCAAATCGTACAAAGGACTGATTAGGGAGCCTCTTCTCATATAGTGGATGATTTTAATGCATGGtcgattttttttcaatttcacttTTGAGTTTGCAATCGTGCAAATTCTCTGTTTGGGAAGAAGCTGACCATACATGTTAGAGAAGATAATATTGTCTTCTGCCATGCTCTTGTATTTCATCTTCTCtttagtttctttatttaatatgTGTATAGATGGACACTATGCTGAATGACCACTAAATTCACAGAATTCGTTCTTACTTTCTGTGTGTTTAGACATCCAAACATGGACATCTTGACTTAAACAAGGTTAATATGTTACAACAGTTTAAAAagaactagtcatcaaatagacatgGATGAATACACATATGAAGTCAGTCTaatctaaatacatttataaGGCATTCATTACACTTTCCCTGACCACCCAAGTTTAGCATGAACTACCAAAAGCAGAGAAttccttgtttgttttttggccaTGACTGATCACATACCTGCTGTTTCACTCAATATCATGATGCTGTTACTTCTGTTTATTTGTGTCTTTATGTGAATTAGCTGTAATGGCGTCAGTAGTTTTCagagttgttgttttgtttaactCTAGACAACTacccaccaagcaattttgtgATTAAAAGGCGTCTAATagattagggctgggtgattaatcggaaaaagtaagaaaaatcgacattcagaacctataatcgatctaactttttcaattactttccctactatGTGTGAGTCATGTGACCCAGCCGGCtccgttaaggctgatttaaacttctgcgtcGAATGCACTGTGTGATCTGGCGCAGCCTTTGCTCTGTCACACACCTGCACACCTCTTAATTTTTACTTCACGTCGCACATTTGCACTACATTGAAGATTATTGGAAGCTGCACCAACGATGCCTTGAGAtgacatattttccattacaataaaattattatttacattaaaatatttgtttactgaGGACTCAAGAAATGCAgtgttcaaaatattatttactgcagttattttatttagaagaaatACTGTtcattttctacttttaatatgaaaaacattgaaaatcatttattttgtttccaaaactgCAAgttctttattttcactttatcaTAAAAAAGTgcctgttggttttaggcaatgtgtgttttaatttcagttgttcaacgttgatgtttaatgaataaacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatggtgtgtttcatttagtattttttttaatcaagtaatgcacctttcattcaaaaatctctcataaaaaaatattttcattactcgagttaaaatgttcaatttgtccaaattgcccagccctacaatagatgtctaaacatagacaTGTTGGCTAAAACTAGGCTTAATTTGGGTTCTCGGAAAATCTAAGAGAGGTCTAACCATAGACCAAAAATATACTAATCATCAAATAGAAAGATTAGACCAGTATCACATTTATTCATGTCTATTTGCTTTAGACTATTATAATCTATTAACCTTGGTTTAGCCAAGACATCAAGCCATATTACATTTTTCACAGAACTGACAACATGCAGTGTAAAGTGTGTTTATACTGTTGTTAAATAACACCACTTATTTCAGCTGCTGAATCTTTTCACTTGCAATAGAatcttcataaaataaaataggttttgaagtcataaaaaatattattacatttatgtaATTAAGTACACATAATTAACACTTATTTGCATACTTAAGTAAGTTAGTGTAGTATTAACTCACTTGGGGTAAATTTTAAAGAATAAATGATGtgatcacagtaaaaaaaaaaaaaactaaaaaaaactcaTAAGTCTTCCTGCACAATTCAGTCAGATGATTTCAAAATTCTCAAAGTGTTTTAATTATTTGTGCCAAGTGCATCAGATGTTTAGTCAACTTTTCGTTTTTAAAGGCTTAAAGTGTTAGTGGACTTATGGACCATTTTGCTTTAAACTGGAAAATACATGTTAGCTTGCAAATTGTTGTCATATTTCTGACTTCTCCAGCCTTTAGTATGATTATCTGTGTTGTGTTTGCTAACTGCCTGAGGCCTCACAGTGCATTCTGGGACTGTCAGCTCAGCTGACTCAGCCCTGCTCACTCAAATCTCATTCATCGTCaactgtgtgttttatttcaactaccTACAGGTCAGACCACAGATGAGGATCGCATTAGGATGGAACTAAAAGTATGAGCTTCTATCAAGGTTGAtgccaaaatatttttacatgcgCTTCAATTGAAACCAGATAGTTGAGAAACTGCTGTGAAATACTCCGGTGAAACAGTTCTCCCAGACTCTGTTGAACTTCTAATTTTCAAAGAGACAAAACTCAACAAATTTATTTCTGCGTTTTTCTGCGAAAAATCTCTTATGATTTACATACCATCTTTGTTCCAAAcccattttaatttctttctgcTTTtggacacacaaaaaaaatttattagaacaagatgttttgaagaatgttgaaaaccgttAACATAGTATTTCCCTCCCCTAATATACTAGATGTTACTAGTTTCCAACATGCTTGCCCTAACTTGAAAGGAATGTTGAGAGAATTGCAGTATTGCAAACCTCCAGAGCTGTACTCGCAGGGTTACCATGAGAACACAATCACGGCCGGTAAAAACAGCTTGTGTCATCACCCATGGCCATGTTCTCTCTCCCTTCCTCTTTTTCCTTCCCACATACTACTGGTAGAGATTCTGTTTGGTTTCCACAGTGTATAACTGCCCAATGACTTGGCACGGAAACACTGATTCATCAGGGCTTGGGTGGGGTCAGTTAATGCTGGTCAGTTTAAGGATGATAGTATGGCTCTCTttgaaatcacacacacactcataagtaGGTGTTGATTTTGAATATGTGGAGATCTAAGATTAAATTGCTTTTAACTTTCTAAGTTTGGCTATAAACTGTATATCTAGAATTCATCTGTAAAATTGTACAATTGTACAAAAATGTGGTTTTGTTTCATTATTACAGTgcatgcttttttattattattattcaccccGAAAGAATGGAATGGAAGTTTGATAAGTTGCCCCAAAGATGACTATATAACTGCTGATCTTTttattctccttcggcttagtcccttatttatcattaattatatattatataattaaccgccaactattccagcatatgttttatgctgtgaATGCCCtctcagccgcaacccagtactgggaaacacccatacagactcattcacacacacacactcattcattcattcattcattcattcattttttttccggctcagtccctttattaatcagggatcgccacagaagaatgaactgccaac

Function

GO:

id name namespace
GO:0042543 protein N-linked glycosylation via arginine biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-91 Predicted to be involved in protein N-linked glycosylation via arginine. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; cleithrum; liver; and polster. Orthologous to human KRTCAP2 (keratinocyte associated protein 2).

Ensembl:

ensembl_id ENSDART00000180935

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019712 lncRNA upstream 28879 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 449990 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 629589 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 670998 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021710 lncRNA upstream 746759 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021929 lncRNA downstream 419335 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019740 lncRNA downstream 521816 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019749 lncRNA downstream 555023 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 568643 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 587114 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00019713 mRNA upstream 11207 23303859 ~ 23314878 (+) True XLOC_009880
TCONS_00019711 mRNA upstream 27936 23282655 ~ 23298149 (+) False XLOC_009879
TCONS_00019710 mRNA upstream 136202 23087326 ~ 23189883 (+) True XLOC_009878
TCONS_00019709 mRNA upstream 204295 23087326 ~ 23121790 (+) False XLOC_009878
TCONS_00019706 mRNA upstream 446893 22865942 ~ 22879192 (+) False XLOC_009877
TCONS_00019717 mRNA downstream 5519 23397785 ~ 23399484 (+) False XLOC_009882
TCONS_00019719 mRNA downstream 6103 23398369 ~ 23399260 (+) True XLOC_009882
TCONS_00019720 mRNA downstream 11336 23403602 ~ 23405346 (+) False XLOC_009883
TCONS_00019721 mRNA downstream 11904 23404170 ~ 23406155 (+) True XLOC_009883
TCONS_00019722 mRNA downstream 38923 23431189 ~ 23432552 (+) True XLOC_009884
TCONS_00019682 other upstream 1622406 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2412601 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 2821220 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 3021810 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 3155257 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 5535 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 214965 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 445654 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 568605 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 1123826 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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