G230913


Basic Information

Item Value
gene id G230913
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2863400 ~ 2866640 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU262081
ACATCTTGAATGACATGGGGGTGAATAAATTATGAGGAAATTTGAATTCTGAAGTGAACTAAACCTTTAAGTCCAGGTCCTTTTTATATACACGCAATGCTACATCCTTCCATTTCCCATTTCACTTAATTGTCCGGATAGATCATCACAAAACATGTACCAAGCCGCAGTGCCTTTGTGTTTAGCATGTGATGAAAAAGTGGAGGGAAGGAAGGAGGGACGCTGCTTCAGGATTTAGCATATAGCCTGGTGAATCCAGGTGAAGCTGTTTGATGAGGGATGAGGAGCTATAGGCAGGCACTGTAGTACTACAAAACATTCACACAGTTAAAGTGATAGTTCACCCCTCACATCATGTACTCACCCTCATGCTGTATCAAACCTTTTTTATGAAACACAAAAGAAGATATTCTGAAGAATGTTGCTAACCAAACAGGTTTCTTCTGACTTCCATATATGGACAAGACAAACACTGAGACATGAATATCTTTTTTTGTGTGTGTTCAGTGGAAGAAAGTAAATCATGCAGGTTTGGAACGACATGAGGGTGAGTAAATAATGCCAGAATGATCTTTTTGGGTGGACTATCCCTTTAAGCACTGATGCTTGATTCATTCTCTCAGGATCAGTATACTCATTCTGTCACATTCCATGCTCAGGTCTATTTATGACTAGTTTTAGATTCAACAAGGGTTCAGGTTTTAGCTTAACCAGTAATACTTATGGTCTCAGCTATCTGGATACAATAGTGTTGGGTTATTTATACAATTCACTTAAATTTCCATTAATGGAAAAGATAATGAAACATACAGGTGGTCATTTCAGCATTTATTTTTTATTTATATAATATTATTATTAATATTAATATTATATTTTATGTATTAGATCACTGTTGTGTGGTGACTTTTGTACTGTCAACATTTTCTGATTCTGTGATCAGTTCACTGCATCAGTCTAATAAATCATTTCAATTGATCATTGGTGAATAACACCACCATTTTTCAAATCTTCACTGTACTGATGTTACGCTGGCACAGCTTTACCCTCCTCCAAATAAGTCTGTGATTGGATTTGGTGATCCAGAGGGCATTAGATATCAAACAATGTAACTGTATGCCTTAATGTTTGTGGGTCTTGTATAGAACTAATCTGATTTGTTTGTTTTTTTAGCTTTAGCTTGGTTGGCCTGGTGAATAATTCATAGTGTTTTAACATTATAAATGTATTAAATGTTAGGCTTTCGAATGTACGACCCGTTCTTGTTAGTGATGGAATTTGAATTTTGGCATGATGTGATGCTGAAAAAAAAAATAGCACCTTTGATATTTACCCATCTCAGTGCTTTTCCCCATGAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTAAATCTGTTGTAGATCGTTTAACTTTGTTTTAAAGAAAATGTCTTTTGTTGTTTGAAATGATATTCTTTAGTTAGGAATTTTTATAATCAATTTGGTTTGTGTAATCGGATATCATTTTAAGCAAATTCCTTTTGAAACGGCTTGAAATTGCTGGACATTGGTACATAATGTTTTGCTCCCTATACATTTTGTTCTTATTTATTGACATTTCGTCTTTTTTAGTTGACCGTAATGCTCGAAAAGGCATTCTGTCAGTTGTAATATTCAAATTTGTATCTGATTGGACAGTGATGAACTAATGGTGCTGCACCTCGTGTCACTGCTGACTTGAACAACTGTAATCAATTAGGCAAACTTGTTCTCAAAAGAAGAGCAACAATAAAAGTGTCTTTTTAAATATTCTATTATTTTATTTTGGTTGCTTTTTATTGTATTTTATTTGTATTATATTTTACCATTTTTACATGATTTCATTTGTGCTATGTTTTCCCATTCTGATTTAAATAATTTATAATGTATCCCAGACAGAGAAAAATCATTAAGCTGGAAAATTCTATACACAATAATCTAATATGCTAAATCATCAACAATGAATACATATTCTAATCAATGTGCACAATGTTTTCATTCATTTTAGCTGCTGCACAGACACTGTGTATGAAAATTATTACCATTATATTACGACTTTTCAATGTTCTTTTTTTATCAGCGGCTTAATTATTATACTTTATTAATGGATAATCAAGTGTTATATCACTTTAGACTGCATCACATGTATTTGGTTCATTCTACTTCTTTTTTTGAGTAATTAGGTAAACTGTGTGGAATGATTTCTGATGTATCTCCATTTTATAATCATAATATGTATATCTTATAATTTCTCATAATATGTTGCTCTTTGTTTTATGGATTTATGTAATCGTTTTAAAAGTAATTATTTTAACTGTGCACATTGATTAGAAGTGGGAAGTTTTGGTCAGGGTTTTATTTGTAATTTTTTACATTGGCTGGAGAGTGATGTTTTTTTTTTTTTTTGTAAGCACCCAATCTGTGGTGTAAATGATTAATTTTAGCGGTTTATGTTGTCAGGTTCGTTTTTTTAAAGTGGGGATGGAAAAATGTGTACATGGAAATACTTTTTTTCTTTATCAACGCTTTGATTTGAAAGTCTTGTTCAACTGTATGTAATTCTACTGCTAAATCATTCTGCATTCTTCTGCTTTTAGCATCTATATATATATATATTTGTTTGTTTTGAGCGATGAAACCGCATGTGGACGTACTGTAGATCACATGACATATCTTTAATTTTGTTTTAAAAAAAAAAAAAAAATCTTGTCTGGTTCTTCTAGTCATGATTAGTAATGATGGTTAATCATACAATAAGTAGAATGTATCTCCTTTTATTATGAAATACTGAAATTCAGTTTAAAATGAATCTCTCTTAAGCTATGTTCCTCTGTTAAAACAGCACATTCTTAAGTTTTAAAGCAAATGTTTTGTTGCTAAATTCATAAATTGAGCTACTCTTGTCTGTAAAGTGCAAAGAATTGTACGATTTTGCAAGAACCAAATTGAAGAGAGAGTTGGTCATTGTGCCCTTACATATTAGTGTGTTTTTGTTTGAAAAAGGGTGAATGAGATATGGTAGTATTTTGTATCTTTGTTTTTTCTGGACTGGTTTTGCTGCTAATGTTTGTCTTAGGCTCTGGCTCTTGTATGAGTTTTATTAAACTGGCCCACCTAAAGATTCCAATTTGCTGCCATTGAGAAAAAAAGCTGCTTTTGCATTTGTTTTATATCTGTAACTGCCTGACGTTTTCATATTTTTGTAAAATAAATATTCCACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU262081 True 3241 lncRNA 0.32 1 2863400 2866640

Neighbor

gene id symbol gene type direction distance location
CI01000054_02857402_02860451 NA coding downstream 2949 2857402 ~ 2860573 (-)
CI01000054_02840361_02849268 NA coding downstream 14132 2839832 ~ 2849268 (-)
CI01000054_02825786_02828251 NA coding downstream 35149 2825753 ~ 2828251 (-)
CI01000054_02709494_02814598 VPS50 coding downstream 48500 2709489 ~ 2814900 (-)
CI01000054_02611877_02612240 GNGT1 coding downstream 251006 2611672 ~ 2612394 (-)
CI01000054_02868603_02911589 CDK6 coding upstream 1804 2868444 ~ 2911805 (-)
CI01000054_02985381_02988122 NA coding upstream 118720 2985360 ~ 2988161 (-)
CI01000054_02999099_03015534 NA coding upstream 132140 2998780 ~ 3015534 (-)
CI01000054_03018229_03030984 NA coding upstream 151436 3018076 ~ 3030984 (-)
CI01000054_03032517_03047094 ZMYM4 coding upstream 165186 3031826 ~ 3047094 (-)
G230999 NA non-coding downstream 167440 2695624 ~ 2695960 (-)
G230997 NA non-coding downstream 168962 2694209 ~ 2694438 (-)
G230978 NA non-coding downstream 247927 2613035 ~ 2615473 (-)
G230977 NA non-coding downstream 279580 2583331 ~ 2583820 (-)
G230965 NA non-coding downstream 309457 2553484 ~ 2553943 (-)
G231001 NA non-coding upstream 50595 2917235 ~ 2917797 (-)
G230922 NA non-coding upstream 51387 2918027 ~ 2979454 (-)
G230910 NA non-coding upstream 84141 2950781 ~ 3043844 (-)
G231003 NA non-coding upstream 190088 3056728 ~ 3056940 (-)
G231004 NA non-coding upstream 223344 3089984 ~ 3090270 (-)
G230923 NA other downstream 25718 2837237 ~ 2837682 (-)
G230178 NA other downstream 1633265 1185533 ~ 1230135 (-)
G230908 NA other upstream 191008 3057648 ~ 3063343 (-)
G231645 NA other upstream 1115207 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1803511 4670151 ~ 4681361 (-)
G232274 NA other upstream 2339559 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3761442 6628082 ~ 6642160 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G132363 NA non-coding NC_056717.1 CM032086.1 12248381 ~ 12249423 (-)