XLOC_009909 (si:dkey-79d12.4)


Basic Information

Item Value
gene id XLOC_009909
gene name si:dkey-79d12.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24733741 ~ 24741400 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019775
AACGAATATTCTAAAAAAGTAATGACAGTATtcgttaaatttttttaagtgttgCGCATGCGCAATATAGATTTGTTGGCCGGACAAATTTAGGAGACGTACTCGCGCGTGCGTGCAGGAACTGAGGGAGGAGCTACAACCAAAACACGAAAATTATTAAAGAAATCGAATTATTCTCAGTAAATTCCTCGGTTAAAACAGGTGCTAATATGGAAGTCTTGCCGTTTGAGAAGGTGGAGcgtgttgttggtgccagaaagAAACTGCAGCAGAAAGCTCTTTACATTCAGAACTCAGAGTACTGCAACAACCTCATCTCAACATATTACAGCTTCTCTGAAGACTCCAGTGATGAGGAGGAATACAAAATACCACTGGCGGCTAGTGAGAAAAGctctgtgtgctgtgtttgtggaGACAACATCCCCTTCCTGGATAAACTGATAGAGCACTTTAAGACACACACAGCGGTGGTGTATTGTCACCTGTGTCACACAAAGTTTGGCCGTGTAATGTCACTAGCATTGCACCTAAAAAATGCCCACGCAAAGGACAGTCACTTATGTGAAGTTTGCGGAGCTCTCTTTAGTTGCACATGGCATCTCAATGGGCATATAGGAATGCATCAGAAAGACAACATGAAGGTAAAACCTGTTGTTAAAAGCGAGGAGACTGAAGCAGTCAGCATCGCCAAGACCTCAAGCTGCATTGATTTGAAAAGAGCAATCACCATGGATCATACATATTTTGACGCGGAACAAAATGTGGCAAGCAACACGTCCAGTCGTTTGCAGAAACACACTGATGGTGAAACTAACTCCATCGATGAAAACCTACACATTAAAACAGAAGCTGAAAGTGTGCCTCTTGATGAAGTGAAACAAAATGAAACCTTCAGCTCTTCGTCCTTTCAGAACCAAATAGAAACAGAGCACCTTAGTTTTGAACTAAAGGAAGAGAATGACAATGAGCTTGAAGACATGTCCATTTACAAAGTGGTCGCAGAGGAGGTCATTGGCCCGACAGGGGATGAAGAAAGTACAGACACTGATGAGGATGCCAACCCTGACTCGCTGCCCCCAGGTGACACGGCATACAATCCAGACGAGGACTTCAGCTCAGATTCTGATTATAATGAGTCTTGCAGATCTCAGCAAAAGAGACTGAAGCCACAGACGCCTGACAAGAAAGCATCTGTGAATGCGAATCGGGATTTGACTGACATTGAGAAGAAATTTTGCTTTCAGTCCGATTCTCCCTTTTGCTGCTATGGTAAGTTCGCCAATTTGGGAAAGCACATGGATGATTGCAGTAAAAAGCGGATGATGTCTTGTTGCCTGTGTAAGGTGGCATGCAAGAATGAAGAGTCGCTTTTAAAGCACATGACCGAAAAACACCCTAAGACTTCATATATCTGCTCGACCTGCCGCAAAGTTTTCCCTAGAcaggaaaatttaaaaaatcatgtgTGCTTGATACCTAGAGGCAACATGGTCACCCCTCTAACCCAGTTACCCAACATGCCTTTGCCTTATAGCAGCGGTCAGGGAAAGCCCATTGCCTCTGCTTTGCACACCAATCAGAGCACTGTTAAAATTCTTAACTTTATTCCAGCAGTTAACAAAGTTTCCACTGATCCTCCACGCCCAGTGGCGTCCTTGGGGTCTACAGAAGCTCTGACGCTGCACCGACTGCTTCAGACCACTCCTGCGGTCACTCCTAAGGTGACTAATTTGGTTCCACAAGTTGTAGCTGTCCCACAAACTCTTATGAGATCCAGTTTCGCATTTGTTTCCCACCCTAACATTCCTGTTTCTACACCTTCAGTAGTGCGTCCCTTGTTGTTGAATCCACCGAGGTTGACTATTCGTGTCCCTACGCCTTCCAGTCGTCCTCTTCCAATTGTCGTTTCTTTTTCCCCCACTGTGAACACCATCACGCCTGCTCTGGTATCCTCCAGCAGGACTGCTCTCAGACAAAGGCCTGTGCCTAAGATTAGACCTGTACCAGTCAACATCCCGCCGGTCACCTCAGTTGCCTGTCCCACCCTGGTAAGCGCTCTTACCAGGAATAACCAATCTCAGGTTCCTCCTGCCCAGATTCAGGCTCCGTTACGAATAGTCGGCATGTACATGAACCACATGGCTCTGCAAAAGCCTCTCGAGCAGAGCTGGAGCTCCAAGACCATCTTTCCCTGTCGTCACTGCGGTGCTGTTTCCAGACAACCGTCGATGAGGGTCCGCCATCGCTACCTTCACCGTGGGTCAAGGTTGTACAGGTGTCAGTGTGGAAGGTCTTTTCAAAGGCAGCTGCATTTGCTGAGGCATCAGGTCCAGCATGCAGAGTCGGTTCAGTTTGTTTGCACGTGGTGCGGAAATACGTTCAAAGGGGCGCATGAACTGACCTCCCACAAACGGAAGCATAAGAAAGGTACGCGGCAAGTGAAGAAGAAATGCAAGGTGGTCTTTGACTGTAGTTGCGGACAGATATTTGCAAGGCCATCCGCGTTGTTGTGGCATAtgcttaaaaacacaaaacacactggAAGAAACCCAAAACCTGTCACTGTtttgaattgtttgaataaatgaGATGAAAGTAA

Function

symbol description
si:dkey-79d12.4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-45 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000078018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019775 True 2602 mRNA 0.46 3 24733741 24741400

Neighbor

gene id symbol gene type direction distance location
XLOC_009908 smg9 coding upstream 420 24721556 ~ 24733321 (+)
XLOC_009907 ywhabl coding upstream 37850 24681177 ~ 24695891 (+)
XLOC_009906 si:dkey-56f14.7 coding upstream 87674 24626448 ~ 24646067 (+)
XLOC_009905 NA coding upstream 159940 24565734 ~ 24573801 (+)
XLOC_009904 CT867948.1 coding upstream 209665 24516092 ~ 24524076 (+)
XLOC_009910 NA coding downstream 93375 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 coding downstream 139722 24881122 ~ 24881218 (+)
XLOC_009912 dre-mir-125a-1 coding downstream 156771 24898171 ~ 24898253 (+)
XLOC_009913 BX539313.2 coding downstream 164156 24905556 ~ 24918957 (+)
XLOC_009914 fpr1 coding downstream 230317 24971717 ~ 24974700 (+)
XLOC_009903 NA non-coding upstream 525838 24198479 ~ 24207903 (+)
XLOC_009902 NA non-coding upstream 705123 24019108 ~ 24028618 (+)
XLOC_009889 CR533578.1 non-coding upstream 1126389 23607231 ~ 23607352 (+)
XLOC_009929 NA non-coding downstream 466218 25207618 ~ 25213978 (+)

Expression


Co-expression Network