RNA id: TCONS_00019775


Basic Information

Item Value
RNA id TCONS_00019775
length 2602
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_009909
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24733741 ~ 24741400 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGAATATTCTAAAAAAGTAATGACAGTATtcgttaaatttttttaagtgttgCGCATGCGCAATATAGATTTGTTGGCCGGACAAATTTAGGAGACGTACTCGCGCGTGCGTGCAGGAACTGAGGGAGGAGCTACAACCAAAACACGAAAATTATTAAAGAAATCGAATTATTCTCAGTAAATTCCTCGGTTAAAACAGGTGCTAATATGGAAGTCTTGCCGTTTGAGAAGGTGGAGcgtgttgttggtgccagaaagAAACTGCAGCAGAAAGCTCTTTACATTCAGAACTCAGAGTACTGCAACAACCTCATCTCAACATATTACAGCTTCTCTGAAGACTCCAGTGATGAGGAGGAATACAAAATACCACTGGCGGCTAGTGAGAAAAGctctgtgtgctgtgtttgtggaGACAACATCCCCTTCCTGGATAAACTGATAGAGCACTTTAAGACACACACAGCGGTGGTGTATTGTCACCTGTGTCACACAAAGTTTGGCCGTGTAATGTCACTAGCATTGCACCTAAAAAATGCCCACGCAAAGGACAGTCACTTATGTGAAGTTTGCGGAGCTCTCTTTAGTTGCACATGGCATCTCAATGGGCATATAGGAATGCATCAGAAAGACAACATGAAGGTAAAACCTGTTGTTAAAAGCGAGGAGACTGAAGCAGTCAGCATCGCCAAGACCTCAAGCTGCATTGATTTGAAAAGAGCAATCACCATGGATCATACATATTTTGACGCGGAACAAAATGTGGCAAGCAACACGTCCAGTCGTTTGCAGAAACACACTGATGGTGAAACTAACTCCATCGATGAAAACCTACACATTAAAACAGAAGCTGAAAGTGTGCCTCTTGATGAAGTGAAACAAAATGAAACCTTCAGCTCTTCGTCCTTTCAGAACCAAATAGAAACAGAGCACCTTAGTTTTGAACTAAAGGAAGAGAATGACAATGAGCTTGAAGACATGTCCATTTACAAAGTGGTCGCAGAGGAGGTCATTGGCCCGACAGGGGATGAAGAAAGTACAGACACTGATGAGGATGCCAACCCTGACTCGCTGCCCCCAGGTGACACGGCATACAATCCAGACGAGGACTTCAGCTCAGATTCTGATTATAATGAGTCTTGCAGATCTCAGCAAAAGAGACTGAAGCCACAGACGCCTGACAAGAAAGCATCTGTGAATGCGAATCGGGATTTGACTGACATTGAGAAGAAATTTTGCTTTCAGTCCGATTCTCCCTTTTGCTGCTATGGTAAGTTCGCCAATTTGGGAAAGCACATGGATGATTGCAGTAAAAAGCGGATGATGTCTTGTTGCCTGTGTAAGGTGGCATGCAAGAATGAAGAGTCGCTTTTAAAGCACATGACCGAAAAACACCCTAAGACTTCATATATCTGCTCGACCTGCCGCAAAGTTTTCCCTAGAcaggaaaatttaaaaaatcatgtgTGCTTGATACCTAGAGGCAACATGGTCACCCCTCTAACCCAGTTACCCAACATGCCTTTGCCTTATAGCAGCGGTCAGGGAAAGCCCATTGCCTCTGCTTTGCACACCAATCAGAGCACTGTTAAAATTCTTAACTTTATTCCAGCAGTTAACAAAGTTTCCACTGATCCTCCACGCCCAGTGGCGTCCTTGGGGTCTACAGAAGCTCTGACGCTGCACCGACTGCTTCAGACCACTCCTGCGGTCACTCCTAAGGTGACTAATTTGGTTCCACAAGTTGTAGCTGTCCCACAAACTCTTATGAGATCCAGTTTCGCATTTGTTTCCCACCCTAACATTCCTGTTTCTACACCTTCAGTAGTGCGTCCCTTGTTGTTGAATCCACCGAGGTTGACTATTCGTGTCCCTACGCCTTCCAGTCGTCCTCTTCCAATTGTCGTTTCTTTTTCCCCCACTGTGAACACCATCACGCCTGCTCTGGTATCCTCCAGCAGGACTGCTCTCAGACAAAGGCCTGTGCCTAAGATTAGACCTGTACCAGTCAACATCCCGCCGGTCACCTCAGTTGCCTGTCCCACCCTGGTAAGCGCTCTTACCAGGAATAACCAATCTCAGGTTCCTCCTGCCCAGATTCAGGCTCCGTTACGAATAGTCGGCATGTACATGAACCACATGGCTCTGCAAAAGCCTCTCGAGCAGAGCTGGAGCTCCAAGACCATCTTTCCCTGTCGTCACTGCGGTGCTGTTTCCAGACAACCGTCGATGAGGGTCCGCCATCGCTACCTTCACCGTGGGTCAAGGTTGTACAGGTGTCAGTGTGGAAGGTCTTTTCAAAGGCAGCTGCATTTGCTGAGGCATCAGGTCCAGCATGCAGAGTCGGTTCAGTTTGTTTGCACGTGGTGCGGAAATACGTTCAAAGGGGCGCATGAACTGACCTCCCACAAACGGAAGCATAAGAAAGGTACGCGGCAAGTGAAGAAGAAATGCAAGGTGGTCTTTGACTGTAGTTGCGGACAGATATTTGCAAGGCCATCCGCGTTGTTGTGGCATAtgcttaaaaacacaaaacacactggAAGAAACCCAAAACCTGTCACTGTtttgaattgtttgaataaatgaGATGAAAGTAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-45 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000155217

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021714 lncRNA upstream 159940 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA upstream 159940 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021933 lncRNA upstream 209665 24516092 ~ 24524076 (+) True XLOC_009904
TCONS_00021712 lncRNA upstream 525838 24198479 ~ 24207903 (+) False XLOC_009903
TCONS_00021716 lncRNA downstream 93375 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021934 lncRNA downstream 93391 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA downstream 154617 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021935 lncRNA downstream 334747 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021936 lncRNA downstream 466218 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00019773 mRNA upstream 420 24721556 ~ 24733321 (+) False XLOC_009908
TCONS_00019774 mRNA upstream 882 24721914 ~ 24732859 (+) True XLOC_009908
TCONS_00019770 mRNA upstream 37850 24681177 ~ 24695891 (+) False XLOC_009907
TCONS_00019771 mRNA upstream 37854 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019772 mRNA upstream 37854 24684107 ~ 24695887 (+) True XLOC_009907
TCONS_00019776 mRNA downstream 101262 24842662 ~ 24873020 (+) False XLOC_009910
TCONS_00019781 mRNA downstream 230317 24971717 ~ 24974700 (+) False XLOC_009914
TCONS_00019782 mRNA downstream 231426 24972826 ~ 24973944 (+) True XLOC_009914
TCONS_00019783 mRNA downstream 236803 24978203 ~ 24992830 (+) True XLOC_009915
TCONS_00019784 mRNA downstream 270594 25011994 ~ 25038855 (+) True XLOC_009916
TCONS_00019767 other upstream 216649 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 770812 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 879130 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 1126389 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 1334581 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019777 other downstream 139722 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 156771 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 164156 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 354083 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 524399 25265799 ~ 25271837 (+) True XLOC_009933

Expression Profile

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