RNA id: TCONS_00019781


Basic Information

Item Value
RNA id TCONS_00019781
length 1921
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_009914
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24971717 ~ 24974700 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGAGCTACAACGACCCAGTTGAACAAGGAGGGTTTGAAGGTACAATGATGGATCCATTCAATTTTACTGAGAGTCCCCCTAATCACAACTCATCAgaatatgatgatgattatgtTGATTACCAAAATTCAGAGCTCGGAAAATCTCTTAACATCATGTCACTCATAGTCTATAGTTTGGCTTTTGTACTTGGAGTGGTGGGAAACGGCATCGTGATTTGGGTTACTGGATTTAAAATGAAAAGGACAGTCAACACGGTCTGGTTTCTGAACCTCGCTGTCGCTGACTTTCTCTTCACTGCATTCCTCCCGCTCAGCGTGGCTTATACTGCCATGGGATTTCATTGGCCCTTTGGACAATTCATGTGTAAATTCAACAGCACTCTCGGTTTCCTCAACATGTTTGCCAGTGTGTACATCCTAGTCGTGATCAGTGTTGACCGCTGTGTGTCTGTGGTGCGTCCAATCTGGGCACAGAACCATCGGAATGTGGGCCGTGCATCTGCGGTGAGCTTTGGGGTTTGGTTGTTCGCTCTGTTGCTGAGCTCACCATACTTTGTCTTCAAGGACACTGCACAGGACAACAGGGACCCAAAAATAATCAACTGCTTCAACAACTTTGCTTTCTCTGATGCTGACACACAAGAGGTGGAGGACCTCCGTATGCTACGACATCGTGCCATGATCATTACCCGTTTCATCATAGGCTTTGTGGTGCCATTTGTGATCATCGTCTCCTGCTATGCAGTCATCATCCATCGTCTCCAAAGAAACCGTTCGATGTCTGGCAAAACTGGACGTCCTTTCAGGATCATAGCTGCAGTGATCACTGCCTTCTTCCTGTGTTGGGCTCCATACCATATCCTGGTGCTCATTGAGATGGTAAACCACATGAGTACTGAATACAGCCCCACCCTGCAACATGTCATCACTGTTGGAATTCCCATTGTGACCAGTTTGGCTTTCCTAAACAGCTGCCTGAACCCACTGTTGTATGTTTTCATGGGACAGGACTTTAAAGACAAAGTGCGCAAGTCAATCCTGAAGGTTTTGGAAACCGCTTTCACGGAAGAAGTTTCACGCACTAATACCTGGACAAATTCAATGACAACTATACGTAACAAAGAGAATGGGAGCAAGTCCTTCTCTGATGCAGAGGTATAACAACGTAACACACATGAATCACTTTTCTAAAGGAGGAATTTACAGAGTGACATGTGGATTAACCACTCGTCATAGATAAAATAAAGACATGCTAACCTGAACAAACTGGACCAGAAGATATTCTTTTAGTTTAAAACTTTACTTTAAAACCCTGCCTTGCCTTTACAGGGAAATGCTTAAGTGATGCAGagttattatatatttgtgtgtgcaaTGTGCATGTGTTTACCCACATAATATTTTGGAGACAGATTTGTTCCCAGAAGTGAGCTAAATCTGACAGAAACAGCCCAAACCTTCATTTtagaaaataatctttttttaaatgtataaaatgatgAATTATTTTATCATTACTGCTGTTGTTGTGGTTTGTAACAATACAGAAGGTTTTTCAGTTATAATTAGGTTATAGTATCTATAACAAGATGTATATAAAAATCACTAGAAGTAAAGAAgaacgtgtgagtgtgtgtgcttgtgtgtgtgcgagtggtGGTAAAGGTGTTAATAATATACCcatattttgacaaaaataaCATGGCATTGTTGGCAATGTAGACCATATTAGAATGAAGTTTTTCATATATTGTGCATGAGATccattgtagttttttttctatttcattaCTGTGTAACTGTTGCctgcatatattatttttcataatgcatattttattttatattaaacggtatcaagtttatttgtgtatttcaAAAACTAAGGAAAATGCTGAagctaaataaacaaactaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0002283 neutrophil activation involved in immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04613 Neutrophil extracellular trap formation
ko05150 Staphylococcus aureus infection
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-121227-2 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Acts upstream of or within neutrophil activation involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in spleen. Orthologous to human FPR1 (formyl peptide receptor 1).

Ensembl:

ensembl_id ENSDART00000156958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021934 lncRNA upstream 74606 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 74606 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 129405 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021714 lncRNA upstream 397916 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA upstream 397916 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021935 lncRNA downstream 101447 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021936 lncRNA downstream 232918 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021937 lncRNA downstream 244735 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 244745 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA downstream 252154 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00019776 mRNA upstream 98697 24842662 ~ 24873020 (+) False XLOC_009910
TCONS_00019775 mRNA upstream 230317 24733741 ~ 24741400 (+) True XLOC_009909
TCONS_00019773 mRNA upstream 238396 24721556 ~ 24733321 (+) False XLOC_009908
TCONS_00019774 mRNA upstream 238858 24721914 ~ 24732859 (+) True XLOC_009908
TCONS_00019771 mRNA upstream 275830 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019783 mRNA downstream 3503 24978203 ~ 24992830 (+) True XLOC_009915
TCONS_00019784 mRNA downstream 37294 25011994 ~ 25038855 (+) True XLOC_009916
TCONS_00019785 mRNA downstream 92180 25066880 ~ 25072830 (+) False XLOC_009917
TCONS_00019786 mRNA downstream 93876 25068576 ~ 25072376 (+) True XLOC_009917
TCONS_00019787 mRNA downstream 99329 25074029 ~ 25080476 (+) False XLOC_009918
TCONS_00019780 other upstream 52760 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 73464 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 90499 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 454625 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 1008788 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019788 other downstream 120783 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 291099 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 366716 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 367024 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1436946 26411646 ~ 26411778 (+) True XLOC_009956

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05612215_05613339.mRNA True 2163 mRNA 0.41 1 CI01000027 5611254 ~ 5613416 (+)