XLOC_009918 (si:dkeyp-84f3.9)


Basic Information

Item Value
gene id XLOC_009918
gene name si:dkeyp-84f3.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25074029 ~ 25080476 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019787
TATAGGCGTCCTGTGTCGCGTAGTCCATTGGTGCTGAAAAGAAAGAGCATGAAAGTTTCAGTGTGAGCGAGGAGAAGATCGGGCAACCGCAGGCGATTCACACATCATGCTTGAAGGAGAAGCTAAGAAGCATGAAACCAACAACGGTGAAGCTGAAACCCAGGAACAGTCTGTGAAGAGTGTGGGAATGGGGGAATTCATTTCAAAAGGTCTGGCGTTAAGCTCCCAGAACAGAGAAGTGGAGGAACCTTCACCAGCAGCCACTAATGTCCAACCTGAACCCTTGTCCTGTAATGCTGATGGGAAAGGCTCCAGTGAAGCAGATGTAAATACATTTCCACAACCGTTTAGTCTAGTTAAGAATACTAATATGGATGCTCGGAGATGCTCAGAAGACTTTGATCAGCCGGAGGCTAATTCTGATTGTGTTTCCAGCACCACAGATAGCCAACCAAAATCATTGCCAACTAATACAGAATTAAATAAACCACAAACTAGCACTCAGGTGTCTGATAAAACAGATGAAATCTCGAGTAATCAGCCTGAAAGGGAGTCTGACATGAATGAAGCCCTTTATGCAAATGTGCTAACCCCTGCGGAAGCTGATTATGATGCATCCAGCTCTAATAAAGGTGATAGCAATTATTCTGACAAAGACATTCACGAGAGCACTGCAGATCCAATGGTTTCTGATGTTGAAATGCAAGATTCGCTCTCTGAAACATTAAACCAAAATGATGAAACATTAGATGATGAAGATCCTTCAACTGAGGAACAACAAGAGTCTAATTCAGAGCAGAATAAAGAGACTCCTGCAGAAGATGACAACGCTAAGGAAAATAGTATGGAGGTTACAGAAAACAAACACGGATTTCCTTCTTTTACCCGCGGACGGCCTCGCAAAGAAAAGCGAGTTATCAGATGTGAACATTGCTCACGTCCGTTCAACCATGCCTCTGCGTATATCATTCATCTGCGCATCCACACCGGTGAGAAGCCCTTTGTTTGCCAGGACTGCGGCAAAGCCTTCGCTCAACTCTCCAACCTTAGATCCCACAGCAAAGTCCATAGATCCAGAAGCCGGAAACACAGAAATCAAAACAAAGTCACAACTGAGAAATCTGCAGACGAGAGTCAAGTGTACAGTACTGATAAAAAAGAAACTGACTTTCATAGCAATCAAATCACTTCTAAAAGAAGGAGAGGCCGAGGGAAAGGAAAAGGGAAACCCCAAACATGTCCAATTTGTGCAAAGGTCTTCTGCTACAAGTCCGTCCTCAAAATCCATCTTCGCATTCACAGTGGAGAAAAACCGTACTCTTGTAAGGTGTGTGGCAAATCGTTTACTCAGGCCTGCACCGCGCGTGTTCATGAACGAGTGCACTGGTCCATTAGGCCTTTCCTGTGCACCAAATGTGGTAAAGGATTTTCTCAGCTCGGGCCGTTAAAATTACATACTTGTGAAGGAAAAACACGCATGCATAACACTGTGAAAGAAATGGAAACCGACGGCGTTGTCAGCTTCAGGTGCCACCTTTGCAAAACATGCTTCAGCACCAGGGATGAGTATGAATTACATGTGCAAGGGCACAAGGATACTCAGCGTTACAGTTGTGACCGATGCAAGCAGACTTTCAGTCTTCTCTCAGAGCTGCATACGCACAGCAAGCATTGTGGTGCCATACGACTTGCAAAATCAAAGTTTTCTGGCTACAGTCCACCTCACAGATCACAACCCAAAAGCCCAATGAACAGAAGAACTCCACCGAGAGTGCGCAGTCCAGCAAAATCTCCTCAAAAAGAGATTTTCTCGCCAAGAAAGCTCAAAAGGTGCTCCTTGCTTGCTTGTCCTCCTCAAATCTTGGCTGCTTCAGATTCAGACTTTCCGAATAACCTTTATTCAGTCAGTCAGCCGATCAAGTCTAGCTATTTTGTATCCCAGTTGAACAGTACGCACCATAAAGCAGATCCAAGGAGTTACTTCTGCCCACGATGTGGACGAATATTCCGGCACGTGGGAAGACTGAGAGCACATATGCTGACGCATTCGCGTGGTAAAAACTTCACATGTGTCTATTGCAACAGGGTGTTTAAGACCTGGAACAAGTTTTGGATTCATCAGCGGCTGCATAGACAAATTAGAGGCCGTTTTTTTTGTCCCAAATGCGGTCGGGGGTTTCGATTTGTGGAATCGTACAATGAACATGTGCAGAAGCACCCGGAGCTTAATGCTCACGCTTGTCCTTTCTGCACTCGTACTTTCTCAAATGCACAGAAGTTGAGGAATCACCAGGAAAAGTGGCACCATTCCACCATGCCCTTTGTTTGTGAGTATTGCGGAAAAGGATTCGAAAGTGCGACCATTCTTAAGCGACACAAAGTTGTTCACTGCACAATTGATCCAATCGAGACACTTTACAACGCTGATCTGCAGTCCACTGGACATCCCTATGAGTGCGGGGCATGCAGTGCCTGTTTTGGGAATTTGGATTTGCTTTTCCACCATCAGCTCCAGCACAAGGCTGCAGATAAAGAACCAACAGCAATGAAGGGCTTTCAGCGTCAGAGCTCAGTCTCACATTCAAATGGTGCAGAAAGGCCTCATTCTGTGTCACCCTTACGTTCATCACCCTTAAAAAAGCCACAGCAAAATCCAAACCAGTCTCCGAGCACCATCAAGACATTGCCTCAACTGTCAACAAATCATCAAACTTTACCTGGCTCCAAAACTAACGAGGAGCAAATGCTTGAAAATCACACTAAAAACCGAGTTCCGGTGACGGCAGAATCAAATAATTCTAACAAGTCCGTTTTGAAGACTGAAAGTACCACTGGTAATTTAGTTTGCACTGAATGCAATGCTTGTTTTTCAGATCTTGTAGCGCTGCATGGGCATTACTTGGAACATGCCAGAGgagaaatataaatatgcagtAATTGTTGTTCTCGTTCGTTCAGCGAGTGTGTGCTAGTTGCATAGGGATCACATAACTTCTCAAACAAATGAAAAGGCTTGCTGTATATGAATAGTTAGTTTTTGTGATATCAACAATACTGACGTGCTGACACTCAGAGGGTGTTTTCATGACactgattttaattttaaatgttcaaaCCTTATGTGGTTTATCAGTTCATTAACAGCACCATTTTGGTGACAAAACGCGAACTTGAAAAACTGGTTTTAGAACGCAAGCTTTTGTGAATgacactgttgaagtcagaatttttagcccccgtttattttttccccaatttccgtaGAATGgggagatttttttaacacatttctaaacataatagttgtaataactcctctctaataactgatttattttatctttgctatgatgacagtaaataatgtttgactagatatttttcaagacacttctatgcagcttaaagtgacatttaaaagattaactaggttaattagattaactaggcaggttaggataatttggcaaattattgtatagcgatggtttgttgtgtagactatcaaaaaaagggggactaataattttgaccttaaaaaatttttttttaattaaaaactgcttttattctagctgaaataaaacaaatacgactttctccaaaagaaaaaatattatcagacatactgtgaaaaatcacttgctctgttaaacatcatttgggaaacataaaaaaaaaaaaagaattgaaaggggggctaataattctgacttcaactgtatgtgtcaaTTATGAAAGCAGAGACACTATGTGTCTTGTGTGTTCAGTCTACATATAGGCTTACAGACTACATGTGTTTTCTGCTCAAGATGCTAAGTGACATTACTGACTACTACTGTCCTGGCATGCGTGATACAGTGTTTTAAGTACATCATTTCTGTGTAACGTACCCTCAGTTTTGTTACACAAATGGTTATTAATATGTTTGGACTAAAGATTCCCGGTAATTGACAGTATTGTTTCATTTAGGAATGCTATTGTTTGATTTAGATCTTAGTTGATATTGCTGTTGGTGCTGTAATTGACATTTCATCTAAAGACGTAGCCATTAAAGGGATCgtttaacaaaaatgaaaatgtagtcaCTAATATTGAGTCGCTTTTCTGTCAAACATAGAAGAATTACTTTGAAACCTGGaaccaatgactttcaaagtaggaaaaacaaagactgtgGATGGCATTGGTTATaggtttcagcttttttttaaatattgtcttCCGTGATAAACTCAAAGAGTTTTGGAACAAGTGATGGGTAAATCATGGCAGAATTtagtttttggtgaactatcccttaaacagATTCAACATCTTGCTCGATCTTAAGTCGTGGTGAGTAAAAATGaagagaataataaaaaattgcattAGGATA
>TCONS_00021935
TTAGTTTCAGTGTGAGCGAGGAGAAGATCGGGCAACCGCAGGCGATTCACACATCATGCTTGAAGGAGAAGCTAAGAAGCATGAAACCAACAACGGTGAAGCTGAAACCCAGGAACAGTCTGTGAAGAGTGTGGGAATGGGGGAATTCATTTCAAAAGGTCTGGCGTTAAGCTCCCAGAACAGAGAAGTGGAGGAACCTTCACCAGCAGCCACTAATGTCCAACCTGAACCCTTGTCCTGTAATGCTGATGGGAAAGGCTCCAGTGAAGCAGATGTAAATACATTTCCACAACCGTTTAGTCTAGTTAAGAATACTAATATGGATGCTCGGAGATGCTCAGAAGACTTTGATCAGCCGGAGGCTAATTCTGATTGTGTTTCCAGCACCACAGATAGCCAACCAAAATCATTGCCAACTAATACAGAATTAAATAAACCACAAACTAGCACTCAGGTGTCTGATAAAACAGATGAAATCTCGAGTAATCAGCCTGAAAGGGAGTCTGACATGAATGAAGCCCTTTATGCAAATGTGCTAACCCCTGCGGAAGCTGATTATGATGCATCCAGCTCTAATAAAGGTGATAGCAATTATTCTGACAAAGACATTCACGAGAGCACTGCAGATCCAATGGTTTCTGATGTTGAAATGCAAGATTCGCTCTCTGAAACATTAAACCAAAATGATGAAACATTAGATGATGAAGATCCTTCAACTGAGGAACAACAAGAGTCTAATTCAGAGCAGAATAAAGAGACTCCTGCAGAAGATGACAACGCTAAGGAAAATAGTATGGAGGTTACAGAAAACAAACACGGATTTCCTTCTTTTACCCGCGGACGGCCTCGCAAAGAAAAGCGAGTTATCAGATGTGAACATTGCTCACGTCCGTTCAACCATGCCTCTGCGTATATCATTCATCTGCGCATCCACACCGGTGAGAAGCCCTTTGTTTGCCAGGACTGCGGCAAAGCCTTCGCTCAACTCTCCAACCTTAGATCCCACAGCAAAGTCCATAGATCCAGAAGCCGGAAACACAGAAATCAAAACAAAGTCACAACTGAGAAATCTGCAGACGAGAGTCAAGTGTACAGTACTGATAAAAAAGAAACTGACTTTCATAGCAATCAAATCACTTCTAAAAGAAGGAGAGGCCGAGGGAAAGGAAAAGGGAAACCCCAAACATGTCCAATTTGTGCAAAGGTCTTCTGCTACAAGTCCGTCCTCAAAATCCATCTTCGCATTCACAGTGGAGAAAAACCGTACTCTTGTAAGGTGTGTGGCAAATCGTTTACTCAGGCCTGCACCGCGCGTGTTCATGAACGAGTGCACTGGTCCATTAGGCCTTTCCTGTGCACCAAATGTGGTAAAGGATTTTCTCAGCTCGGGCCGTTAAAATTACATACTTGTGAAGGAAAAACACGCATGCATAACACTGTGAAAGAAATGGAAACCGACGGCGTTGTCAGCTTCAGGTGCCACCTTTGCAAAACATGCTTCAGCACCAGGGATGAGTATGAATTACATGTGCAAGGGCACAAGGATACTCAGCGTTACAGTTGTGACCGATGCAAGCAGACTTTCAGTCTTCTCTCAGAGCTGCATACGCACAGCAAGCATTGTGGTGCCATACGACTTGCAAAATCAAAGTTTTCTGGCTACAGTCCACCTCACAGATCACAACCCAAAAGCCCAATGAACAGAAGAACTCCACCGAGAGTGCGCAGTCCAGCAAAATCTCCTCAAAAAGAGATTTTCTCGCCAAGAAAGCTCAAAAGGTGCTCCTTGCTTGCTTGTCCTCCTCAAATCTTGGCTGCTTCAGATTCAGACTTTCCGAATAACCTTTATTCAGTCAGTCAGCCGATCAAGTCTAGCTATTTTGTATCCCAGTTGAACAGTACGCACCATAAAGCAGATCCAAGGAGTTACTTCTGCCCACGATGTGGACGAATATTCCGGCACGTGGGAAGACTGAGAGCACATATGCTGACGCATTCGCGTGGTAAAAACTTCACATGTGTCTATTGCAACAGGGTGTTTAAGACCTGGAACAAGTTTTGGATTCATCAGCGGCTGCATAGACAAATTAGAGGCCGTTTTTTTTGTCCCAAATGCGGTCGGGGGTTTCGATTTGTGGAATCGTACAATGAACATGTGCAGAAGCACCCGGAGCTTAATGCTCACGCTTGTCCTTTCTGCACTCGTACTTTCTCAAATGCACAGAAGTTGAGGAATCACCAGGAAAAGTGGCACCATTCCACCATGCCCTTTGTTTGTGAGTATTGCGGAAAAGGATTCGAAAGTGCGACCATTCTTAAGCGACACAAAGTTGTTCACTGCACAATTGATCCAATCGAGACACTTTACAACGCTGATCTGCAGTCCACTGGACATCCCTATGAGTGCGGGGCATGCAGTGCCTGTTTTGGGAATTTGGATTTGCTTTTCCACCATCAGCTCCAGCACAAGGCTGCAGATAAAGAACCAACAGCAATGAAGGGCTTTCAGCGTCAGAGCTCAGTCTCACATTCAAATGGTGCAGAAAGGCCTCATTCTGTGTCACCCTTACGTTCATCACCCTTAAAAAAGCCACAGCAAAATCCAAACCAGTCTCCGAGCACCATCAAGACATTGCCTCAACTGTCAACAAATCATCAAACTTTACCTGGCTCCAAAACTAACGAGGAGCAAATGCTTGAAAATCACACTAAAAACCGAGTTCCGGTGACGGCAGAATCAAATAATTCTAACAAGTCCGTTTTGAAGACTGAAAGTACCACTGGTAATTTAGTTTGCACTGAATGCAATGCTTGTTTTTCAGATCTTGTAGCGCTGCATGGGCATTACTTGGAACATGCCAGAGgagaaatataaatatgcagt

Function

symbol description
si:dkeyp-84f3.9 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-66 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000097863

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019787 False 4381 mRNA 0.41 2 25074029 25080476
TCONS_00021935 True 2884 lncRNA 0.45 1 25076147 25079030

Neighbor

gene id symbol gene type direction distance location
XLOC_009917 im:7147486 coding upstream 1199 25066880 ~ 25072830 (+)
XLOC_009916 znf1035 coding upstream 35174 25011994 ~ 25038855 (+)
XLOC_009915 si:dkeyp-84f3.5 coding upstream 81199 24978203 ~ 24992830 (+)
XLOC_009914 fpr1 coding upstream 99329 24971717 ~ 24974700 (+)
XLOC_009913 BX539313.2 coding upstream 155072 24905556 ~ 24918957 (+)
XLOC_009919 si:ch211-261d7.3 coding downstream 15007 25095483 ~ 25104993 (+)
XLOC_009920 zgc:66448 coding downstream 26868 25107344 ~ 25115472 (+)
XLOC_009921 si:ch211-261d7.6 coding downstream 36351 25116827 ~ 25124951 (+)
XLOC_009922 zgc:92590 coding downstream 46459 25126935 ~ 25130075 (+)
XLOC_009923 CU062628.1 coding downstream 52859 25133335 ~ 25135212 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 175776 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 176918 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 192811 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 500228 24565734 ~ 24573801 (+)
XLOC_009929 NA non-coding downstream 127142 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 138959 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 153477 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 260940 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 261248 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05675953_05678901 NA coding CI01000027 null 5675145 ~ 5679050 (+)