XLOC_009917 (im:7147486)


Basic Information

Item Value
gene id XLOC_009917
gene name im:7147486
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25066880 ~ 25072830 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019785
GGCAACTTTGGGAATAACGGCAGCTCACTAGAAGCTGGCAGCAAAACACTTACCGCCTTTCCGATAGAAAGGAAATCATTCTTCACAATAAAACCATGCTAGTTTGCGAACCGTTCTTTCCTGAGGAGGTATTCATCAATTACCGAGACCTAGGGAGCAGTTCTTAAATTTTACATTGGCAGAGAAATCATCTGTTACCTGCAAAATGCTTGGGGTTCAAGAAACAAGGTCTGCTGGGAGTCCTAAAACATACAGCTGTGTTGCATGCTCAGCTACATTTCATAGTTTGTCATCTCTCCTGGTTCACCAAGCATCTCATGCAAGTGAAGCCTCTCATCAGCCGGAATCAACACTACCTACTTGTGTCAGCTGCGGAAGCTTGTTTGTAAGCAAAGATCTTCTTGAAAAACATCACTGTGTAACATTGCCCTCTCCAGTCATTACCTTCGTATGCGATTGTGGCGAGGAGTTTAGTGATTGCATAGCATTTGAGGACCACAAAATACAACATGACTCAGAAAACATAGAACAACTGGATTTGGAAAGGAGTTCTGTTGTTCCAGAAAGCAAAATGCCAACTTGTGTCAGCTGTGGAAACCTATTTGCGACCATGGATCTTCTTGAAAAACACCAATGTGTTAGGTTGCCCACTCCAGAATCTCCAGCATCTCGAGCCCACCTCCACACATGTGACTGTGGCAAGGAGTTTGGTGATTTTACAACACTTGAggaacacaaaaaacaacatgacACAGAAAACAAGATGGATTTATCTTTTGAGAAGATTCCTGTTATCCCAGAGAAGAAAACAGACCTCATCCGTCTAATCTCAGACCAGGTTTTTCATAGTCTTTCACCTTTAGCTTTCAATGAAAAACAACTTGCACCAATTCCACCTTCTACTTCAGATTCCATAACAAAGACGATAGAATCCACTACAGACATGGAAAGCAAAATCTTGCAGTCTTCCGAATTGCACTTTGTGAATGAAGAGCAAGTGCAGACTCTTGAGGAGGACAATGACACTTTGAACTCCTCAACTGCGCTAAATCATTCTTTGCACGACAATGAGAAGTCACCAGAATCTTCAAAAGAATCAGATGCAGTCGATTCTGGTTTAATGGATCAAGATTCTGGTGAAAAAAAGAAGTCAATCCTAAAGATATTAGCATCTGCCTACATGAGTCATAAACAGCCCGTCCAAATGAAACAGAGGAACTTGCCCCCAAGAAAAGTCTCACCAAGAGCACCAATTCAACCCCCACCCACAGTGATTATATCAAAGCCTGAACCGCCGAAGATTCAATCAACACCATCAAAAGAGACTGTGAGTGTGCAACCTGGAAAGATGTTCTCAAAGAAGGGGAAGATTATACCCGTGACACAAACTCTCTGCCCCGTGGTGGTTCTTGAGACTCGACAGAAACTCTTTGGCCGAGACAATGTGGAAGGTAGACATCAGTGCAGACTCTGTCGTAGAGTTTTCCAAGATCTAGACACCTTGATAATGCATCATGCCTTGCATAAGAAAGAAAGAGTTAAATTTTGTCTTTATTGTCAGCAATTTGTGATCACTGTAATCTCAGTTCCAGAGAACCACGTCTGCTTTAGTTCATTTTCTAAAAATATTCAGCCTTTGACAGCAAAGATGCCCCCAGAACCGGTTATCCCTACAGCTCAACAGCTAGAGAAAATTTTCTACTGTTCGTTATGCAAGCGTGGTTACGCACGGATACGCAGCCTCAAAAGGCACAACTGCCCATGTAAAGCTCCTCTGAAATCCGCATCTCCTACGGTTAACAGAGTTGAACTCAAGCCCCACACCTTAGACAGCAGCACTACAGCGATGCAAATCTCGAAAAACAATCAAATGTCATCACACCACGTGAATATTGGTGTAGGCACAGAGCCGATAAAGGTTGAGGAGCATCACACAGAATTTCCTATTGACAAGAAAAATCAGATTCATCCACCAAAACCTCCTGAGCACAGCTCTAAACCAACTGAGTCAACCATTAACTCAGTTAAACTACCAGAAAACATGGCTAGtatgaaagaagaagaagaaaaggagaAATTGGATGAAAAGCAGTGGACCATGCCACTGGATGATGCTGAAATTGATACACTAGTAGATGGGGAGCAAAAGGATTCAGATGAGGATGATTTGGCTGACATGGATGAAGACGACTGTTATGAAGAGGATGATGTCAATGTAGAGTCTTCTGAGGAAATGGAAATTGATTCGGAATCTCTTAGTGAAGGCTATCAAGTGTTCATTACTAACAAAGGCGTGAAGCGGTATGTTTGCATCGAGTGCCAAAGAAGCTATTCTCGGCAGTTTACTCTAAAAGAGCACCTGAAGGTTTGTGAGGCGAGGATTTTAAAGGAGCAAACTATTGAGAATAAGATAGCTGATTTGCCTGGGCCAATTAAAAAATTTCCATGTCCTCAATGTGGCAAATTTTTCAGCCGTAAAGATAATATGAATATGCATCAAAAAAAGTGCCACGGAAAAACTGCTGTACCTGCAGTAGTAAGCACCAGAACAGAGCCTAAAACTCCTGTAGCCCAAGAAAACCTGTTTGTCCTGTCACCATCCACAGAAAACAAAGCAGTACAACAGGAAACTCCTCAAAATACTAGCAGTAGCAGAAACTGGGGGATTATGTCACTTCCATCTGTTCTCCCAAGAAAAGTGACATGTGAATGCGGAGCCTCATTCACTTGTCCTCGACTACTCTTCGAACATCTGCAGCAGCATGCCCAGGAGTCCTACATTTGTCCACACTGTGGTGAGAGCTTGCAGTCGTGGATGGATTTTGAAGCCCATCAGCAATTGCACAAACAATCTCAAAGTTCAAATGAGCAAAGAGGTCCCCAACAGCGTCCTCATACGTTTTCCCAAGCGCTGCCATTACATGCTCCAACACGACCTCCACAATCTCCAGGTTTTTCTGAGCATAAACCGCCTGCTCTCTTGCCACCTAAACATTTGAACAATGGGCCAGATACAGCGCCACTTACTTGCCCCAGATGCAAAAAGAACTTCAGTCAGCGCAGTTCTTTGGCAAGGCACATACGGTTGCGTTGCACTGGTGATCCTACAACTCAGAAGAAACACCCCTGCACTCGATGTGGTGCCACCTTCCTCAATCCATTAAACCTTAAAATTCACGTTCAAAGCAATACCTGTAAACCTGCATTCAAACCAATTCGCTGCCCGGTCTGTGTTCGTTGGTTCAGTTGTCTAGATGGGCTCAAGAGACACCTGGTCTCGCACAGCAGGCAAGCAGTCTGTCAGATTTGTGACCAAAACTGTCCAAACCTTCAGGCACTCGAGGAACATAAAAGAAAGGTTCATGGCTTGAACAACAGattgaggccagaggagaatgcaCCGAATCTGTCGTCCCAACCAAGTGTGGAAAACACTTCAGTTACTCCTTTTCAATGTCATGTTTGCCTTCGCTATTATCCAAAGCTTCAATCCCTGAAGGATCACCTAAGGAAAGTTCATCGGCCTAaacagccaaaacaaaacaatctgagTACCACAGAACCAGTTCGCATAGGGCAGTTTCTGTGTCAGATATGCGGGCGCAGCTATCCTACCATTAAGTCTTTAAAGAACCACAGAAGAAGGGTGCATAATATTCTCGGTGCTGTGTTTCCACCAATGAAGGGACCTGAGCAAAACAGCGCTCCCGGTCAATTTCAATGTCACATTTGCTCACGCAGCTATCCTGATATACAGTCCCTCCGAAACCACAGGAGAAGGGTCCATGGGATTGTGGGAGGTTTAGACGTGTCAAAGGGGGTCACGCAACATAATCTATACAAGTGTCTGATTTGCCAGCGCAGCTACCCTGATGAAATATCTctaaaaaatcacaggaggaggGTTCATCGCATTTTAGGCCCAGTCCCTGAACCGTCAGTATCCACAATAGCAACAAATGACATAGAAGAAGATCTAGATCAGAAGCCAATACCTTTCCTgtaaatgaatgcatttttaaacTGTGAATCTGCTGCCTGTGTGTTGCTATAAATTGGAGCATTGTGTTAGAAtgctgaaaaagaagaaaaaagaactgCTATAAGGCAGCATTTGAGTACATTATTCAATTTTTAAGAAGTAGAAAGGATTTTCAGTagcttaaacatttttaaaaagttcatatcTGATCAGTAGTGTATCAGGTTTTTGTTGTCTTGTTGATATCATTTTAAGCTTCCTCTGTATTTCATCAATGCTGCcttaatttaattcatgtatTAAATACAGATGTTTTGTTTTCCTCAGTGAAAGGGAGATTTTTCTTTTGCAAGCagtgtataaaatgtaaaatagattAGTTGACAACTGTTTTTATAGAACCCATTGTGTATTGTTAGTGTactgtaaataatacattttgatgtGAACATGTTGTACGTTACATCAATAAACACAA
>TCONS_00019786
ATGCTTGGGGTTCAAGAAACAAGGTCTGCTGGGAGTCCTAAAACATACAGCTGTGTTGCATGCTCAGCTACATTTCATAGTTTGTCATCTCTCCTGGTTCACCAAGCATCTCATGCAAGTGAAGCCTCTCATCAGCCGGAATCAACACTACCTACTTGTGTCAGCTGCGGAAGCTTGTTTGTAAGCAAAGATCTTCTTGAAAAACATCACTGTGTAACATTGCCCTCTCCAGTCATTACCTTCGTATGCGATTGTGGCGAGGAGTTTAGTGATTGCATAGCATTTGAGGACCACAAAATACAACATGACTCAGAAAACATAGAACAACTGGATTTGGAAAGGAGTTCTGTTGTTCCAGAAAGCAAAATGCCAACTTGTGTCAGCTGTGGAAACCTATTTGCGACCATGGATCTTCTTGAAAAACACCAATGTGTTAGGTTGCCCACTCCAGAATCTCCAGCATCTCGAGCCCACCTCCACACATGTGACTGTGGCAAGGAGTTTGGTGATTTTACAACACTTGAggaacacaaaaaacaacatgacACAGAAAACAAGATGGATTTATCTTTTGAGAAGATTCCTGTTATCCCAGAGAAGAAAACAGACCTCATCCGTCTAATCTCAGACCAGGTTTTTCATAGTCTTTCACCTTTAGCTTTCAATGAAAAACAACTTGCACCAATTCCACCTTCTACTTCAGATTCCATAACAAAGACGATAGAATCCACTACAGACATGGAAAGCAAAATCTTGCAGTCTTCCGAATTGCACTTTGTGAATGAAGAGCAAGTGCAGACTCTTGAGGAGGACAATGACACTTTGAACTCCTCAACTGCGCTAAATCATTCTTTGCACGACAATGAGAAGTCACCAGAATCTTCAAAAGAATCAGATGCAGTCGATTCTGGTTTAATGGATCAAGATTCTGGTGAAAAAAAGAAGTCAATCCTAAAGATATTAGCATCTGCCTACATGAGTCATAAACAGCCCGTCCAAATGAAACAGAGGAACTTGCCCCCAAGAAAAGTCTCACCAAGAGCACCAATTCAACCCCCACCCACAGTGATTATATCAAAGCCTGAACCGCCGAAGATTCAATCAACACCATCAAAAGAGACTGTGAGTGTGCAACCTGGAAAGATGTTCTCAAAGAAGGGGAAGATTATACCCGTGACACAAACTCTCTGCCCCGTGGTGGTTCTTGAGACTCGACAGAAACTCTTTGGCCGAGACAATGTGGAAGGTAGACATCAGTGCAGACTCTGTCGTAGAGTTTTCCAAGATCTAGACACCTTGATAATGCATCATGCCTTGCATAAGAAAGAAAGAGTTAAATTTTGTCTTTATTGTCAGCAATTTGTGATCACTGTAATCTCAGTTCCAGAGAACCACGTCTGCTTTAGTTCATTTTCTAAAAATATTCAGCCTTTGACAGCAAAGATGCCCCCAGAACCGGTTATCCCTACAGCTCAACAGCTAGAGAAAATTTTCTACTGTTCGTTATGCAAGCGTGGTTACGCACGGATACGCAGCCTCAAAAGGCACAACTGCCCATGTAAAGCTCCTCTGAAATCCGCATCTCCTACGGTTAACAGAGTTGAACTCAAGCCCCACACCTTAGACAGCAGCACTACAGCGATGCAAATCTCGAAAAACAATCAAATGTCATCACACCACGTGAATATTGGTGTAGGCACAGAGCCGATAAAGGTTGAGGAGCATCACACAGAATTTCCTATTGACAAGAAAAATCAGATTCATCCACCAAAACCTCCTGAGCACAGCTCTAAACCAACTGAGTCAACCATTAACTCAGTTAAACTACCAGAAAACATGGCTAGtatgaaagaagaagaagaaaaggagaAATTGGATGAAAAGCAGTGGACCATGCCACTGGATGATGCTGAAATTGATACACTAGTAGATGGGGAGCAAAAGGATTCAGATGAGGATGATTTGGCTGACATGGATGAAGACGACTGTTATGAAGAGGATGATGTCAATGTAGAGTCTTCTGAGGAAATGGAAATTGATTCGGAATCTCTTAGTGAAGGCTATCAAGTGTTCATTACTAACAAAGGCGTGAAGCGGTATGTTTGCATCGAGTGCCAAAGAAGCTATTCTCGGCAGTTTACTCTAAAAGAGCACCTGAAGGTTTGTGAGGCGAGGATTTTAAAGGAGCAAACTATTGAGAATAAGATAGCTGATTTGCCTGGGCCAATTAAAAAATTTCCATGTCCTCAATGTGGCAAATTTTTCAGCCGTAAAGATAATATGAATATGCATCAAAAAAAGTGCCACGGAAAAACTGCTGTACCTGCAGTAGTAAGCACCAGAACAGAGCCTAAAACTCCTGTAGCCCAAGAAAACCTGTTTGTCCTGTCACCATCCACAGAAAACAAAGCAGTACAACAGGAAACTCCTCAAAATACTAGCAGTAGCAGAAACTGGGGGATTATGTCACTTCCATCTGTTCTCCCAAGAAAAGTGACATGTGAATGCGGAGCCTCATTCACTTGTCCTCGACTACTCTTCGAACATCTGCAGCAGCATGCCCAGGAGTCCTACATTTGTCCACACTGTGGTGAGAGCTTGCAGTCGTGGATGGATTTTGAAGCCCATCAGCAATTGCACAAACAATCTCAAAGTTCAAATGAGCAAAGAGGTCCCCAACAGCGTCCTCATACGTTTTCCCAAGCGCTGCCATTACATGCTCCAACACGACCTCCACAATCTCCAGGTTTTTCTGAGCATAAACCGCCTGCTCTCTTGCCACCTAAACATTTGAACAATGGGCCAGATACAGCGCCACTTACTTGCCCCAGATGCAAAAAGAACTTCAGTCAGCGCAGTTCTTTGGCAAGGCACATACGGTTGCGTTGCACTGGTGATCCTACAACTCAGAAGAAACACCCCTGCACTCGATGTGGTGCCACCTTCCTCAATCCATTAAACCTTAAAATTCACGTTCAAAGCAATACCTGTAAACCTGCATTCAAACCAATTCGCTGCCCGGTCTGTGTTCGTTGGTTCAGTTGTCTAGATGGGCTCAAGAGACACCTGGTCTCGCACAGCAGGCAAGCAGTCTGTCAGATTTGTGACCAAAACTGTCCAAACCTTCAGGCACTCGAGGAACATAAAAGAAAGGTTCATGGCTTGAACAACAGattgaggccagaggagaatgcaCCGAATCTGTCGTCCCAACCAAGTGTGGAAAACACTTCAGTTACTCCTTTTCAATGTCATGTTTGCCTTCGCTATTATCCAAAGCTTCAATCCCTGAAGGATCACCTAAGGAAAGTTCATCGGCCTAaacagccaaaacaaaacaatctgagTACCACAGAACCAGTTCGCATAGGGCAGTTTCTGTGTCAGATATGCGGGCGCAGCTATCCTACCATTAAGTCTTTAAAGAACCACAGAAGAAGGGTGCATAATATTCTCGGTGCTGTGTTTCCACCAATGAAGGGACCTGAGCAAAACAGCGCTCCCGGTCAATTTCAATGTCACATTTGCTCACGCAGCTATCCTGATATACAGTCCCTCCGAAACCACAGGAGAAGGGTCCATGGGATTGTGGGAGGTTTAGACGTGTCAAAGGGGGTCACGCAACATAATCTATACAAGTGTCTGATTTGCCAGCGCAGCTACCCTGATGAAATATCTctaaaaaatcacaggaggaggGTTCATCGCATTTTAGGCCCAGTCCCTGAACCGTCAGTATCCACAATAGCAACAAATGACATAGAAGAAGATCTAGATCAGAAGCCAATACCTTTCCTgtaa

Function

symbol description
im:7147486 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-286 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000086626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019785 False 4460 mRNA 0.42 2 25066880 25072830
TCONS_00019786 True 3801 mRNA 0.44 1 25068576 25072376

Neighbor

gene id symbol gene type direction distance location
XLOC_009916 znf1035 coding upstream 28025 25011994 ~ 25038855 (+)
XLOC_009915 si:dkeyp-84f3.5 coding upstream 74050 24978203 ~ 24992830 (+)
XLOC_009914 fpr1 coding upstream 92180 24971717 ~ 24974700 (+)
XLOC_009913 BX539313.2 coding upstream 147923 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 coding upstream 168627 24898171 ~ 24898253 (+)
XLOC_009918 si:dkeyp-84f3.9 coding downstream 1199 25074029 ~ 25080476 (+)
XLOC_009919 si:ch211-261d7.3 coding downstream 22653 25095483 ~ 25104993 (+)
XLOC_009920 zgc:66448 coding downstream 34514 25107344 ~ 25115472 (+)
XLOC_009921 si:ch211-261d7.6 coding downstream 43997 25116827 ~ 25124951 (+)
XLOC_009922 zgc:92590 coding downstream 54105 25126935 ~ 25130075 (+)
XLOC_009910 NA non-coding upstream 169769 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 185662 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 493079 24565734 ~ 24573801 (+)
XLOC_009929 NA non-coding downstream 134788 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 146605 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 161123 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 268586 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 268894 25341724 ~ 25341811 (+)

Expression


Co-expression Network