RNA id: TCONS_00021716


Basic Information

Item Value
RNA id TCONS_00021716
length 316
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_009910
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24834775 ~ 24897111 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTTTTCCACCTTCCCACAAGTCCCTGGCTTCTTATCCACACCAATAAGATAGGAGCTTCTCAGGCAGGGAGAGGCCAGGATGGGGTTGCAGACCAGAAAGAGAGAGTTTCAAGTTCAAGTGCAAGATTACATGTTCCTGATCAAAAAGAAGAGCTGAGCGGGAAAAGAAAGTGAGGTAACTAAGCCGAGGGGAGTCATCTGTATGCTGTTGTAACCTTAACAGCGCTCTCGTTCCAAATGAGAGCAAAAGTGAACAAGAGAATACAGGGAGAGAAATCCACCCCTCTGCTTTCTCTCTGCCACTTCTCTCCTC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0034457 Mpp10 complex cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005730 nucleolus cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021714 lncRNA upstream 260974 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA upstream 260974 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021933 lncRNA upstream 310699 24516092 ~ 24524076 (+) True XLOC_009904
TCONS_00021712 lncRNA upstream 626872 24198479 ~ 24207903 (+) False XLOC_009903
TCONS_00021713 lncRNA upstream 626872 24201433 ~ 24207903 (+) True XLOC_009903
TCONS_00019778 lncRNA downstream 53705 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021935 lncRNA downstream 233835 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021936 lncRNA downstream 365306 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021937 lncRNA downstream 377123 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 377133 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00019775 mRNA upstream 93375 24733741 ~ 24741400 (+) True XLOC_009909
TCONS_00019773 mRNA upstream 101454 24721556 ~ 24733321 (+) False XLOC_009908
TCONS_00019774 mRNA upstream 101916 24721914 ~ 24732859 (+) True XLOC_009908
TCONS_00019770 mRNA upstream 138884 24681177 ~ 24695891 (+) False XLOC_009907
TCONS_00019771 mRNA upstream 138888 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019776 mRNA downstream 350 24842662 ~ 24873020 (+) False XLOC_009910
TCONS_00019781 mRNA downstream 129405 24971717 ~ 24974700 (+) False XLOC_009914
TCONS_00019782 mRNA downstream 130514 24972826 ~ 24973944 (+) True XLOC_009914
TCONS_00019783 mRNA downstream 135891 24978203 ~ 24992830 (+) True XLOC_009915
TCONS_00019784 mRNA downstream 169682 25011994 ~ 25038855 (+) True XLOC_009916
TCONS_00019767 other upstream 317683 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 871846 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 980164 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 1227423 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 1435615 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019777 other downstream 38810 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 55859 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 63244 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 253171 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 423487 25265799 ~ 25271837 (+) True XLOC_009933

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05535896_05537998.mRNA True 1604 mRNA 0.37 3 CI01000027 5535855 ~ 5539126 (-)