G230908


Basic Information

Item Value
gene id G230908
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3057648 ~ 3063343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU262068
GGAAAGAGAACTAAAGTAGCTATAATTCCTTTTGTTTTCCATTTCATATATGTAGTGTTAGATGTTAATGATAATAGCCTGCTTTGATTCAGTCATGTACAGCAGTTAAGGTAGGACTTTGTATTGGTTTACTTCTGTATCCTCACTGTCTTTCTCTTACTGCAGGGGCCTCAGGTGATTGAAGGAGGTTAAGAAGCATCATACAGTTTCAGAAATGGATCTACCAAGGAACCTGTTCTATGAACTAATGACTTGTTCGGCACTAGATGTTCCTGCACAGCGGACGATAATATGCAGTCCTGTGGGAGTGTGACATACAGATGGAGACGTGGCAGCTGGGAAATCTTTAGAGCAGCACTGGATGCATCATAATTGTATCCATATTTTTTTTCTGTTAATAAACTGTCAAGATCCCTGGTTTTTGTGTGAAAATTTATTTTTTAAAGATGAAACCATTACCTGAAAATGCAGAACCTTGATCATGTAGCTAACTTGTTTTGGAGTTGTTTCTAGAATTAGTATTTTGGTTTAGCATATCAATCCAATGTCTTTTTATTAAACATACTGGCAAGATTTCTTTAAGAAAGAGAGAGGAAAATAACATGTTTAAGAGTTCTGCAGGTCTATAAACACAGACAGACCTCTGTAACCCAGTAGGACCCAGGCTGCTGTCCAGTATCAATTAAGGTCAAGGTGCTATGTTTCTCTTGTTTTATCACTGTTGTGTCCTATTGGCTGACAGCTACTTCTGGAAATAGTTCAAAAAGGAAAATAAACCTGCAGTCTGAGAAGTGTGGTGAGGTAAATGTGGGTTAGAGTTTTTGGGCAGTGTTTTTAGCAAACACTTTTCTCAAGGATTGTTAGTTATGATTGTCAAATAGGATATCACATCCTTGTAGACTGATTAATTTAACAGTGACTCAATATGATCACTTAATCACCATAAATATTTACTGACATAGCAGTTGGCAGAAAAAGTTCGATGTGATGCACAATTCTAAGAATACTTGGATTTATGAGTATTCAGGTTGGGACATTTTCCTTTTCAGGGTAATTTTAAATCAACACGCTACTACAACATGCATTCTAGTTTATTTTAAATGGTTCATCTGAGGTAGAGAATTTATTTGCCAATGTTGGGATTTATTGAACTGAAGATGATTCAAAGACAACCCGGACATCAGATATCTCCATGTGCCAAGATGTCAGAAACGCTCAAGTCTTTCTGTGAGATGTAAGATGACAACGGAACGAGGGAAAGGGAGACAGGGAGGGAGAATTTGGTGGTGTGCAACCAATGGGCTTACCTGATGTATTTTTAATGTGCATGAATGATTGATCACTGTATGTGGACACATGCACCCCCGAGGGGCGGCTGCAGTCCGTCTGGTGCTGTCGGTACAGACATGAGTGCAACCACGAGACCTTCTGGGCTGAGTGTGAACACTGTGGAGTTAAAGCATCAGTGGGCAATGCAGAGAAATCGCACTCTGGTCCGGACGTACCTGCTCTCCAGCTCTGTGCTTCCACTTCCTGGCTCACGGAGCAGAGATGATTTCAGGCTTCCATCATTGTCCAGATCAACACATGGTCGGACCACCATGGTGCCTCTCAGGTAAGCTGATATCTGACGCCTCGAAGTCTAGGATCTATTGGCTGGGACTACAGGATACATTTTAGAAAAGTCAATTGTATAGACTGGGAAAAAATGTTAATCTAAAAATGGTAACTGCTAATTTGACTGGTTTTATTCAAGTCAAAACTATTAACATCACTGAATCCATCTGAATATGTTGATTTATAGCAACATAAAAAAAAAACATTTTTATGCACTAAATCAGGTAGAAATAGCACTTTAGGTTAATGGCAAATTACCAATTTTTACAGTGGAATCTTTACTACAACTGTATTGTTGCATAACAGGACCTGGTTAAGCTACTCTGATATTAATATCCTTAAATAAAAAATTGAAGGCACATATGAAATTGTATTTTATTTTTAATGTTTATAGTATTTCAATAAAACATTTTAAAATAAGTTTATTATTTTTAATATTCAGAACAAGTTTAATACTTACAGCAGTGCAATACCCAGAATTAGCAGAGCTTGTTGGGGTTTGCATTAAACTTCAAAGCTGTACAAATGTGACTGCAGACACATCTCTTCATCAGCTAGTAACAGGAAGTGTCAAACCTGAAGAGAAAGAAACCTGAGAAACATTCCTCTTGCATGGCAACACACCCAAACAGCTCACAGGAAAAAAACAACAGCTATATTACACTGATTATCCAATGACAGCAGCTAATGTTGCCAGGGTTTCTCAAGCAGCACAATGTATGATGGATATGTTTTAAAATCAACAGAGGAAAGGAAGACGTAATTTTTTTTTTTTTTTTTTTTTTTTAAATATGAATTATTCATTCAAAAAATCTCTGTATTTTTTGGGAAGTCTCACCACATTTTACAACCTGAACCAACTAAAGATTATCAAAATGATTTTTTTTTTTTTTTTTTTTTTTCATAATAATAATAATAGCAGTTGATTTAGAGTTTAATGACCCATTTGTTCTGTGTTTCTAGACTGGCAGATCAGTTGGTATTTCAAAGTTATCAAAATTATAATATCTTAAAGGGATAGTTCACCCAAAAATGGAAATTCTGTTGTCATTTACCCAGCCTCAAGTTGACCTAAACCTGTATGATTTTTTTTCTTCTGCTGAACACAAAATAAGACATTCTGAAGAATACTGGTACCTAGTCCCCATTGACTTCCATAGTTTTTTTTTTTTTTTTCTCCATACTTTGGAATACAATGTTTGATTACCCATATTCTTCAAAATATTTTTTGTGTTCAGCAGAAGAAAGAAACTCGTACAGGTTTGGAATAACTTGAGGGTGAGTAAACGGTGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAAGTCACTACTGTTCAAAAGTTTGGGGTCAATAAGATTTTCTTTTTCTTTTTTTAAATCTATTTTAAATAACTTTCTATTTGAAAACATTTTAAATGTAATTTATTATTCATGTGATCTCATAGCTGAATTTTTAGCATCATTAAGGCCCTTCACACCAAGAACAACAACTAAAAAGATAACTATAACGACAATTTGCGTTCACACCAACTAACGATAACGGTCTGTTTATTCTAAACTCACGCGCTGCGGTTTTAAAGTGTGTACAACACGTTTTTGCTGTTCTTGTTGCATTTACACGGTTTAAACCAGCAGATGTCCTCAGCATGCTATGTTTCTAGTTAATAGTTAGTGTAACGATCTAATCTAACAGTGAACTTAGCTGTAGTCAATATATTGGAATAAAAACGTATAGTCTTTTTCACTGCAACTTCAAAGGAAGTAAGACAATGCTGTCGAAACTAGATACCTGATACGCTAGATACCTGAGGTAATTTTATTACACTATTTGCTAGCCTGGCATAATGATCTCATCGTTAATACTTCTCACCATTTATTCCAAGGGTATGCCCGATTGTTATCCATATATCCATTTTCTTTAAAGTATCCTTGAAAATGGGGTTTGACTTGTCAAACAGATGTGGCTTTTTCTGGACCTCGGCGATTAACTTCTCCGCAAAGTCGTCGGCCATTTTAAATGCGCGAGCGAGAATGGATTCTGATTGGCTGGCAGTGTTTTATCGTTCAACAGCAGGGGGAAAAATCGTTCTGAAAGCGATCTCAACGATATTGTTTCCCTATATCGTTATCGTTATAGCTGTGGTGTGGACAGTGCTATTCTTTTATATTTAGAACGATTTTTAAAACTATATCTTTATCGTTATCTTTATAGTTATTGTTCTTGGTGTATACGGACCCTTACCTGTGTGGAACGATATGAGTATTTTCATTTTTGGGTGAACTAACCCTTTTCTTTCAAAAATAAAAATAATAATAATAATAATAATAATCTTACTGACCCCAAACTTTTGAACGGTAGTGTAGGTATTTGATAGTCCTTAATATGTCCATTCCTTCAGCTGTATAACCTGAAGATTTTCTGATTAACCTCATGTGTGTCTGTTTTGGTCTCTCCTCTGATCTCACAGTATCAGTGAGCCTTCCCTGTTCACCCCAGGCCAGAGGGCGGTTTTCGAGGGGTTTTCAAAAAACCGCCACCCCCTTTTACTCAAAAGTGGCCCATCTCTTTCCTCCTGCAAGACCCCTGAGAACACAAAGACCCCTCAGCAGAGCTATCATCAAGTTTACATGCATTTCTCTCAGCCTCTGAGGCCTGTACCAAAGGTTACACAAATCTTTTCTCGCAGTCAGCGGCGGTTCACAGAGATCAGAGGCTTACAGCCGTTAGTGAGGCAGTGCATGCAGCCTGTAAACCTCGAGACTTTATCTGTCAGAGGAAAGACTTGCCTCCCCACCCGGCATTTACCTGACGCTTCATCTGCCACGTCTCGTACTCAGCTGCATGTGTTCTTGCCTGCAGAGGGCGCTGGACAGGAGGAAGATAGGGACAGCGAGTCGGTCGATGAGGGTTTCATGGATGAGCTGGATAGCAAAGTCACCACACTGAGGCTTCAACAAGATCCAAAGAAACCCAAACAGTGTGGTTTAGAAAAATCACTGACAGGTGAAATGGTACGATTAACATCTTAGTGTCATCATTGTTGGGTGTAATTCATTATTGAACCTAATTACTGTGATTTAATTAGGCTACTTTTCCCTTTAAAAAGTAAAGGGATTACTCTTAATTTTTCTGTAATGTAATTACAGTTACTTCAGATGTAATTGCATTGAACACTGTATAGACTATACAACAATTCTATATTAAACAATAGTGGATTTAACATCGAAACTTAATGTTAAAATGTCTGTTTTTAATGTAACCTTCTCCCTTTACACACTTCAGTCAGTTGTTTATTTGAAATAATTAAAAAGTGCAGTTTCATGTCCTTGTATTGTTCAACTGGTCGAGGTTGATGTAAAGTACTTAAGTAATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262068 True 4998 TUCP 0.37 3 3057648 3063343

Neighbor

gene id symbol gene type direction distance location
CI01000054_03049995_03054032 NA coding downstream 3616 3049864 ~ 3054032 (-)
CI01000054_03032517_03047094 ZMYM4 coding downstream 10554 3031826 ~ 3047094 (-)
CI01000054_03018229_03030984 NA coding downstream 26664 3018076 ~ 3030984 (-)
CI01000054_02999099_03015534 NA coding downstream 42114 2998780 ~ 3015534 (-)
CI01000054_02985381_02988122 NA coding downstream 69487 2985360 ~ 2988161 (-)
CI01000054_03082593_03087260 SFPQ coding upstream 19005 3082348 ~ 3087545 (-)
CI01000054_03485424_03500327 NA coding upstream 421485 3484828 ~ 3500489 (-)
CI01000054_03918853_03925416 NA coding upstream 855055 3918398 ~ 3925416 (-)
CI01000054_03964701_03964965 NA coding upstream 901347 3964690 ~ 3964965 (-)
CI01000054_03998494_04025965 NA coding upstream 935075 3998418 ~ 4026082 (-)
G231003 NA non-coding downstream 708 3056728 ~ 3056940 (-)
G230910 NA non-coding downstream 13804 2950781 ~ 3043844 (-)
G230922 NA non-coding downstream 78194 2918027 ~ 2979454 (-)
G231001 NA non-coding downstream 139851 2917235 ~ 2917797 (-)
G230913 NA non-coding downstream 191008 2863400 ~ 2866640 (-)
G231004 NA non-coding upstream 26641 3089984 ~ 3090270 (-)
G231010 NA non-coding upstream 52832 3116175 ~ 3116434 (-)
G231016 NA non-coding upstream 75977 3139320 ~ 3139613 (-)
G231096 NA non-coding upstream 148713 3212056 ~ 3258021 (-)
G231144 NA non-coding upstream 244729 3308072 ~ 3308359 (-)
CI01000054_02857402_02860451 NA other downstream 197075 2857402 ~ 2860573 (-)
G230923 NA other downstream 219966 2837237 ~ 2837682 (-)
G230178 NA other downstream 1827513 1185533 ~ 1230135 (-)
G231645 NA other upstream 918504 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 1606808 4670151 ~ 4681361 (-)
G232274 NA other upstream 2142856 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 3564739 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 4102092 7165435 ~ 7169539 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014224 NA non-coding NC_007130.7 CM002903.2 40057836 ~ 40066591 (+)