XLOC_009912 (dre-mir-125a-1)


Basic Information

Item Value
gene id XLOC_009912
gene name dre-mir-125a-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24898171 ~ 24898253 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019779
GTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGGTGAGGTCCTCAGGAACAGGGCTGCATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000083123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019779 True 83 miRNA 0.53 1 24898171 24898253

Neighbor

gene id symbol gene type direction distance location
XLOC_009910 NA coding upstream 1060 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 coding upstream 16953 24881122 ~ 24881218 (+)
XLOC_009909 si:dkey-79d12.4 coding upstream 156771 24733741 ~ 24741400 (+)
XLOC_009908 smg9 coding upstream 164850 24721556 ~ 24733321 (+)
XLOC_009907 ywhabl coding upstream 202280 24681177 ~ 24695891 (+)
XLOC_009913 BX539313.2 coding downstream 7303 24905556 ~ 24918957 (+)
XLOC_009914 fpr1 coding downstream 73464 24971717 ~ 24974700 (+)
XLOC_009915 si:dkeyp-84f3.5 coding downstream 79950 24978203 ~ 24992830 (+)
XLOC_009916 znf1035 coding downstream 113741 25011994 ~ 25038855 (+)
XLOC_009917 im:7147486 coding downstream 168627 25066880 ~ 25072830 (+)
XLOC_009905 NA non-coding upstream 324370 24565734 ~ 24573801 (+)
XLOC_009904 CT867948.1 non-coding upstream 374095 24516092 ~ 24524076 (+)
XLOC_009903 NA non-coding upstream 690268 24198479 ~ 24207903 (+)
XLOC_009929 NA non-coding downstream 309365 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 321182 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 335700 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 443163 25341416 ~ 25341543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location