XLOC_009924 (znf576.1)


Basic Information

Item Value
gene id XLOC_009924
gene name znf576.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25137483 ~ 25163213 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019794
TAGTCTGCATCCCGGTGTTGTGATATGGCGATCTTGCATAAAGGCCGTCAGAAATCTGCAAAACCAACGAGTTATTAGGAACCAACTGTATATAAAACCGATGCTGTGAGGATGAAAAAGAAAGTGGAAAAACCTTAAAGTTCTGAATTCAGTTAATTTGGAATTTGAGCAACATGGAACTCACTGTTGAACCACACTGTGAACCAGCTGTTTCTGAAGCAAACCTTGAGCACCTTTCACTTTCGGACCCTCTGTCTTCTGTGGAAGCACCATTAGATGGTATTGAGCATGGAATGGAGGCTGCAGTTCGAAACAGTGGCCTTGAGTTAAAACTGGACCTCTATGTCCCAATACCACCAATAATAGAGCCGATAACTCCTGTAGAGGAAACAGTGGAGCATTGTGTTCTTCCTGTGGCAACACAAGAGGACGACACACAACCTGAAGCCACAAAAGGGGAAACAGATGCCAATGCTGAACGTTTTGAGTGTGAAAATCAGCCAAGTGTGATTGAATCGAGCTCAGATACTGTGACAGAAGCACAATGTGAACAAGCATCCAATGAAACGGCCTCATCAGACTGTAAGGCTGCACCTTGTAAACCAGAAGAGGCTGTAAGCTCCAAAGAAACACCACAAACGCGTAAAGCCTCATCTGGACGTAAAGCGTACAATACAGAGAGAAAAAACATCCCTCCAAAGAAGGACAAATTTAACCCTCTGAGAATTGACATGGCCAAAGTAATACCTCTCACCTCATCCCAGCTTTCACTACAGTGCATGGAGTGTCACATCATCTTCAGTGACTCTAAAAGCAGAGATCGCCACATTAAATTGAGTCACCCTGCGGAGTATCAAAAGAATATGATGAGAGATGTTGTCTTTACGTGCTATGTATGTGATCAGTCTTTCACCTGCTCCACAGAGCTTATGGCCCatcagcgcacacacacagataatgGGCGGTTCAAGTGCCCTTTCTGTAGTGAGGCCTTTTACACATCCTCCGAGCTAACAAGTCACAAAAAGAAGATGCACTACAGCAAGCATGGATATTCTTGCACAGAGTGCGGCAagccttttaaaacatttactttgCTCAGATACCACCAGCGGGTACACACAGCAGAAAAGCCTTATGTTTGCCCACGCGAAGCTTGTGATAAAATGTTTTCTACGTCTAAATCTCTTCGGAACCATTTACAAAAACATCAAAAAGAAGAGGGCAAGGGGGACCAGACAAATGCTTCAACAACCATTAAGAAAAAGAAGACTAAAGAAACTAGTGAAAGGAAATTTCCATGCCCGCACTGTGAAGCAGTTTTCAAGGCCTCTAAAGCTCGACTTcttcacataaaaaataaacactccCAGGAGTCGCAAAGTAGCACTGTTTTGGTGCCACAGCCCAAAGCACCTGGACCTACTCTGGTGCATACAGCAAATGGACAACCACCGACTCTGTTTGTGGAAACTGTAGGACCAGCATCACATCCAATGGCTGCAAATAAGCTGGATGCTGTGCAAATTAAACGACTAATTGAGAAACTTGGAAATGTACAGAAGGTAAATCAGTTGGTTATACTGCCTTTACAGCCACACCGTTTTGGTTTACCTCATCCTCAACCATTACATGTGAATTTTACTCAGCCAACACAGCTTGAACAACCCAACACAGACCCATCAAATGCTGATCAAATTAACCTCTCGAATTTGCAACCGAAGGAAGCTGCTGTTCTGTCCCAAGAGGGAAAATCTTTTTACCCAGAAAATTCAGAGATCCAAGTTACACCTGTTGAACTAACCCAAACTGAGGCACAAATGCAAATGGAAGAAATTCACCTTGAACTCATACCGATACAAACTGAACCTTCTGTTTTGCTTGATCAAACGCCTTTACAGGTTGAAGCATCACAAAATAATTCTGTTCTTGAGCTGCCACGTACAATAGAGGAAAATATAACAGTCACACAAGCTAATGAATctttggaaacaaatgaagaaCCACCTTTAATCCCTCAACCTGAAATGGAAAAGTCTAATCATGTGGAGGGAGTTGCAGTTTTGAAAAGAAACAATGACCCACCTTTAATTCTTCAACCTGAAACCTCAAAGTCCTATCATGTTAAAGGCATTGCATCTTTGGAAACAAATGATGAAGTAAGTTTATTTTCTCAGCCTGAAACTAAAACAAAGCCTAATCAGGTGGAAGGCATTGCAGCTTTTGAAATAAACAATGAACCACCTCTAATTTCTCAGTCTGAAATGGCAAAGTCTCATGTGGAGGAGGACATTGTGCAAGATTACACAGTAACATCTGAGGAGATCGTTTCAAGAACAGAAATGCCATGTCCCACACAAGATTCAACAGACATTTCAATAGGATCACACTTAGAGGGGATAATTAAACAAGGCGATATTAACAAATTAAGCAAGCCTCAGGAAGTTCTGCAAATCCAAGCTCAAAAGGAACAAGTTGAGTCAGAACAACAGCCATGCATTAAAGGGCCCCAACCACAGCCTGATTCTTTTAATAGTGTGCAGAATGACAAAATAGTAAACCAACAAAGCTCTGTGCCAACACCAAACCAGACTCAAGTTGGGTTACAAGATAGTACCTGTGTTCAGAAGAAACTTCCAACAAAGAAGAAAAGATCCAAGAAACAATTGGGGAATGAACGAGAGAATAAGGAACCAAGTAAAGAAATTGACAATACGGCATCATCATCCAAGAAAGTCAAAACTTCATCCAAGGTCAATCCTAAGAAAAAGgaaaatgcaaaaaacaaaaagcttGTTGTAAGGTTTGGACCCAGCGAGAAGAAAAAATCCTCTAAACCGAAGGTGATCAAAacatctaaaacaaaacaaaaccagaaCCAGCAAATTTGCGATGAAGGTCATGTGCCTGCTTTGTCTGAGAGTGAAAATAAATTGGATTCTAACCAAAAATTGCAGAAAGATAAAAAAGGAAAGGGGGCTGAATCTCCTTCAGGAGGAACAGTGAAGTCAGTGGGTCAAATTAATAATGcaactgacagtgttttggtGGCGCCAGAAGCAGCACAGCAAGGGAAACCTCAGAAGAGAAAATTGAACAATCCAAACAATTTGGTCAAAAAGGCAAAGTCTGTCCAAGAGGCTCAACAAGATAAACCGGCAGTACATATgccaaagaaaaagaaacaagcCAAAATTTCGGAAGACGACGGTCCTAAGAAACCCAAGGTTAGAAAGACCCAAAATGATgcttttcagaaaaaaacacaaaaaataccaAAGCATAAGGCAAAACAGGCTAAATGTAGTCCTGATGTTCCGGACCAGGCTCACATAGAGAAACAAGCTTTGCTCTTGTTGAAAGGTCATAAGCAACCTCAGTTGAAGGTACACAAGTTAGATGCCACTGAACTTGAAAAATCACCCCCGAGCAAGAATGATAACAAGgtactgcaaaaaaacaaaaatgcaaaaaataaatcctTGAATGTAGCacaccaaaagaaaaaaaagtcaggtGGAACCAAATTGTTGGAGCATCTGGGTGAGTCCTTATCTTTGGAAATGCCCCTTGTTGAGAACAGTCCAGGTTCTGTGCCCACAAAGCCGAAAATTGTACGGAAACGCAAAGCTCCTATTAAGATGGACCAGGAAATAGCTTTGAGCCCTCCATACTCCCAACTTACTCTTGGGTGCCAAGATTGTGGGAAGACTTTTTCAGAAGTGTCTGCATTGCAGCAACACATGGCATCCTGGCACTCTGCTGGAAAGTTAGTCTTTTCAGACGAAATTAATGTAGCTAAAAAACGTGTCATTCAAACTAGCCCTAAAGAGAAACGTATTCTATCTAATGTCTTTGAAATTCAGGTTGCAACAGATTGGGATATTGAGACTGAAGTGGGTGAGATTGTAGGCGAAAGACTGTCCTTCCCAGCATTAAGTCCATCTCCATCTTTGACACTTGCCTCAAATTGTGCTGATGGAAAGGAACAAGAAGGAGACAAAGATGCTGAAGGAATTGCTCTTGGGTTTGAGGAACCTGCAGAGAAAAATTCTTCTGAAGTGTGCGAAATCTCAACAAAGTCATCAACCCTAGTATTAGTCAAAACCATCGTGCCTCAGGAGGTCACTGAAGATGCTGTTGAGAGTGTTTCAGTGAAAGAGCAAAGCAATGAGTTCAATCCTATCACAGAAATTTCTTGCGACAAAGTCAAAGATGCAGCAGAGGAAGAAATTAAAGAAGAACTGCCCTTAGGGGTGAATTTAATAATGGTTGGAGACCAAAATGCAGAAGAGAACCACAACACTGAGGTGAGAAATATTTCAGGTGTCTCACAAGAGCCTGAAAATGAAGTGAGCAACCCATGTTCCCAGTCTCAAGAACCTGCAAAAGATGCAGAGACTGTTATGAATCAGAATGTTCTTACAGAGATTAAGCAAGAAGAGGAGGAGGTCCTTGTCCGCGAAGCTGATGATAATAAAAGAGTAATTGGAGGGAATTCTGTAAAGAAAGGTAAAAAGGGAGTTGGAAAAGCCTGGGGCAAGAAATCAGTTGGAAGAAGAGCTAGCACAGAAAACAGAAGTAAAAAGGACATGGAAGGAAATAAGGAGGCAGAGGAATGCCAGGTTCTGTATCACCTCTGTATAGTTGACAGTgcagaaataaagaataaagaaacagACAAGAATGGAGTTAATGCCTCTGAAACTCCTCAAGTGTCGACTTCTGACGAGGCTCCTGAGGAGCAAGTGGTTTTTGAGTTGGACTCTGTTACCACAAGTGTAATGGATATTGTCAACTCTGAAGAAGGATCATTTGAGACATCTCAAGAGCTGGTCAGAGAAGGCAGCTCCCCTGGAATCATTCTGGAAAAATTCTTTACTGCTCGTGAGAGAAATATGGAGACCCCAAACATCCAAAGTCCAGTTAGACAGGCAAACTCCAAGATGGATAACAGTAAAGTGATTTCAGCTGGCACATCTTCTGACGTGAAAATGGAAGAACGATCTTCAAATCTGGTTCAGCACAACCCGACTTCTTCTGAGGGTGGTTTATTGCGGGGAGTACAAATGTTTTTGGTGAAAGCAGAAGACCACGTGTCTGCAACTGAGATATTCCAGACACTCCAGCCTGCACCTCCTCAACGGGTTGCATGTCCAGATAAGGCTGCTGATAAGACTGCGGTGCCCATTCAGAACTACAGCAAACAATGTATATTTTATCCCGTTAAAGAGGAAGAGAGGGAACTTTTAGTGGAGTCTCCTCCTGCAGCTCAAACAAGCTTGGGTTCTAGAGAGCACACAGGGCCTTCATCTGGAATTGAAGAATGTGAGGAAATCAGAGTGGATTCAGTGCAAATGGACATGCAGCAATTGTACACAAACTCTGAAGAGGGTGATGTTTCTGAACAGCAGAGGACTCAAGGCTTCTTAGAGTTTCTGTCTGAGAATACGGACGCAGTTGATGCAGGTAATATCCATTCTGAACCAGAAGCTGAAACCATCGTCATGTCCTGTTACCATGGAATACAGAGTAATGGGACGGTACATCATAACGGCACAGAAAGAAGTGATCCATGTGTTAGAGCAAATGTTGGTGCTTCTCCAGTGAGCCACAGAGAACCAGAGAGGCAGCTATGGAAGCCCATTACCTACTTCAATCAATATTTTAGTTTGGACACGTGGAAGGAAATTGCTGTTTGTACAAGTAAAGCCTCAACTCTGCCAGACCCGGTTACAGAAAAAGAGGTTGCAAAATATGTGGGAATACATATTGCAATGGGAACACTGAAGTTTCCCAGCACTAAGCTCTACTGGGAAGATTACACACGAGTACCTCTGATCTCTGATGCCATGTCGGCTTCCAGATTCTGTGAACTCGCTTGTAAACTGACGCTGGTTGGTTCTGCTGGATCTTCCACTGAGTTGAGTATTGATCAGCATTCTGAAGAAACTAACAGTGAGCAACCAGGACAGAGTAACAAGGTAGCGCATGATTGCACAAACTCAAAGACAGATCCTTTGTGGAAGGTAATGCCATTGATTAGAAGAGTTCAAGATGGATGCCAGGCACTGGACCGAAATGGAAGCTACGGGGTCGACCAGTACCCCCTTCCTTTTCAAAGACACCCTACACATTCATTACTGCACACTGTTGTCGTAAGTGGTGGAGGGTTGGTTTTGGACTTCAACTTGAGCATAAATGACTCCAACAGAGAAAACTTTGTTGAAAAAATGGTCTCTAAAGGGAAGGAAAGAAATGACGGGATGGTGTTTCTTTGCAAACCAGAGCTTTCCACACCTTCTATGCTTGAGCATCTTCTAGAGGCGGGTGTGCAAAGTGCTGGAAAGGTCGGCGGGGCAAGAGGGCAAATAGGTGATGAGTTTGTGAGCTCAGACGGAAAGCTCAAACTTTTCAGATGTCACCATGGCTTTATCCTTTCAGCGGTGGTAAAGGAAAAGCCACGCTCCACATCTCTCGTCAGCGGCTTTGAGCGCGCGATTAAAGCTGCGAATCTCAACCGTGATTTAAGAAGTCTCTATCGTACTCCTTGCACAAACTCAGCCATCAGCGCTTGGCCACAGTCTGTCCTCTGGGACTTGATTGATTTGGTGTTGGTAAACGCATGGATACAATATAAGCAAGATTACAGCGATATTACCGATCTTTTATCTCTCATGGCGTTTCGTTTGGAGGTGGCCAAAGCATTGATTCTCTCCAGTGGTGTTGACGCTCAAGACTTGTCACCTCCCTGCCCTCCTGCTCCCAAAATTCACAGCTCGGATACAAATGCACGGCCCTCTCAGGTTCTTGACAACCCTTTGCCTGATGAACACACGCGGTATGACGGCTTCGGCCATTGGCCAGAGCAGCTGGCTGAGGGCGAGGAGGCCAGGAGGTGTCGATTTGGAGGCTGTGAGAGAACATCTCGTGTGCGGTGTCTCAAATGCTGTGTGTACCTGTGCATTTCCCGAAACCATAACTGCTTCCTGAAGTTTCACAGTCAGGGGTCTTCATGAAGCTCGCAAGCTGTGTATCTttcaatttaaagggatagttcacccaaaaatcgaATTACTGCCATCAATTACTCATCCTCCTTTTGTTACAGAACTGTTTGTTTggttgtatatttgttttgttaaacacaaaataatgttgtaaattaatTACCATTGACTTAAGGGTAAGTACATTTGGATTATTTTGGTGAACGATcacttaaacatttttattaattgtattaaataatacagagaagctagtttgtttgttttttttgtcaaaaactCAAGCCATCCTTCCATATTTATTATAGTTGTGTGAAAATGACTCTGTTGAACCCATTTGAATGTATAATGAACGTTACACTGTGCTCTATGGTTTTGTTCTAACCGGAagttgtatttaattgtgttttgcgTTTtgcaaacagtaaaaaaaaacatgccatgtTCATTGTTTGCATTCTGTTTCCTAAAAAGGTAAGGTGCTCCATTAATTTTAAACATCACATGACATTGGGGGACaaaatatgtactatatatcTTGACCACAAACTAACTAATTTCTTTccataactatttatttaaatctaattgtcttcatttgttttctaataagtttctttaagtaaacaaaaactaaattaaaaaggttctaataaattaaacatttaattatatttttttaattaatttcaggcATACTGTGTGCCTGAAAAGATATTTAACCTTGTATATCATATTGGCCATGTAATAATTTGTTGCCttgttgtatttaaattaaaacaaggcaACTAATTAAATCAGTGTGGCCTGTATTTGCTAAAACGAGGCAAGTGTCAAATATAAAAATTTGgaaaattttaatttatgatCACAAATTAAGTAAAATGAGCAAACAACTTGATAAACTTGATCAAATTGACTTACTAAAATGAGAATAAATTCTTAGTTTGTGGTCACTATgcatatgtaatattttatatcatGTCAACCAGAGATTTGTAGGAAtgttacattttcatttaaaattttgtgGCTGTTTTGCATTGTGCTTGTACATTggcaaagcattttctttttatttgtagaATAAAATCCTTTACATTTTGAATGGG

Function

symbol description
znf576.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF576 (zinc finger protein 576).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-125 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF576 (zinc finger protein 576).

Ensembl:

ensembl_id ENSDARG00000097819

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019794 True 8122 mRNA 0.41 10 25137483 25163213

Neighbor

gene id symbol gene type direction distance location
XLOC_009923 CU062628.1 coding upstream 2271 25133335 ~ 25135212 (+)
XLOC_009922 zgc:92590 coding upstream 7408 25126935 ~ 25130075 (+)
XLOC_009921 si:ch211-261d7.6 coding upstream 12532 25116827 ~ 25124951 (+)
XLOC_009920 zgc:66448 coding upstream 22011 25107344 ~ 25115472 (+)
XLOC_009919 si:ch211-261d7.3 coding upstream 32490 25095483 ~ 25104993 (+)
XLOC_009925 znf576.2 coding downstream 230 25163443 ~ 25169845 (+)
XLOC_009926 wu:fe05a04 coding downstream 8619 25171832 ~ 25181542 (+)
XLOC_009927 hcst coding downstream 20994 25184207 ~ 25187809 (+)
XLOC_009928 tyrobp coding downstream 33359 25196572 ~ 25200757 (+)
XLOC_009929 NA coding downstream 44405 25207618 ~ 25213978 (+)
XLOC_009913 BX539313.2 non-coding upstream 218526 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 239230 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 240372 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 256265 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 563682 24565734 ~ 24573801 (+)
XLOC_009930 NA non-coding downstream 56222 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 70740 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 178203 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 178511 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05724339_05733809 NA coding CI01000027 null 5723434 ~ 5733859 (+)