XLOC_009925 (znf576.2)


Basic Information

Item Value
gene id XLOC_009925
gene name znf576.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25163443 ~ 25169845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019795
gatgcaggttttttttttcagtctaccAGCGGGTCACTGATTACACGTTTGCGCCCCCTTTATTTTCATATGTCAGGCTTATGCCTTTTCCCTCCAGACAAGAAAAGGTTATTCACTTCCAGTAACATTTACAGCAAGTGTACACTGAATTCTTAAAGCCTGAAAATGGACTCTGACCTACTGAAGATAGAGGAGATGGTGATGGGAGGTGGAGAGGCTGCTGCTGCCCCTGCTGAACTGCCCCCTGAGAAGCCTGAGGACTCATATGTCACCTCCATTAGGGACCGCTTGCCACCTCCTGTTATTCAGTCATACCAGCATGAAAGCCTACAGTGTTTCCAGTGTTTCATAACTTTCTGTAACTCAAAAGCCAAGGAAAGGCACATGAAGAAGAGTCATCGGGAAGAGTACAAACAGCAACTTCAGCAGTGCGATACTCTCTTCACATGTTATGTGTGTGATCGAACCTTCCCCTCGTCTGAGGAACTGACACAACATCAGTCGACCCACAACAAGGAGGACAAGCCCTTTAAATGTGTTCACTGCCAAGAATGTTTTCGTACATTCTCAGAGTTAACAACGCATCGACGACAGGTGTGTCCGGAGCGTCAGTTTGTGTGTAAAGAATGCAACGAGACATTTCGAAGCCCCGGACTTTTGCGTAGCCATCGTTTGATGCAGCACCCCGTGCCCCAGGATGAAGAGGATGTGGAGGATCCCTCCAAGACCTACCGCTGTGGTAAATGCGGACGAGGATTTGAGGAAGAGGCAGAGCTCCTTCAGCATCAGGAGAACCACGCAGGAGACCGGCATTGCAACGGTGGCGCTGCTGTCAAACGCAGAGGGAGGCCCCCCAAATATGAGGCCGCAGCTCCCAGTGAAAAGAAggtaaagaaaaagaagaaggatGAAGACGCAGAGGAAACCAATCATTCAGAGGATGCTTCTGCAACATCGGCAAAAACAGGGGGAAGAAGAGGACGCCCTGCCAAATCCACCCAGGAACCCGAGGCGGAAGATGAGAAGGCAGAAAATGATGACAAGAAATCTGTCCCCGAGCCAGAACGGCAGATCCCTTGCACTGAATGTGATCTCACTTTCCCCACCCTGACGCTGCTGCGAATGCACAAGAAAGAGAAGCACACGCAGAAGAAGCCTCACCCCTGTAAAGAGTGTGAGGAGAGTTTTAACCGACCTGCGCAACTGCAGGCCCACATGGCCAGAGCACACAGCGTCGGACGGCACACCTGCCCCACATGCGGGAAAAGCTTTGGCAGAGAGAGCAACCTGAAGGCTCATCAGCAGAGCCACGAGAAAGAGGAGAAGCTGGCTGGAAAAAGATAATTCAGTTagagggagattttttttttgcaggtgtACGTTAACAaaacacatttgatttttttaatatgttgtgtATAGAAATATAGGTTGGGGGAGGGTTTGCGTTAGGGCTGAGGTTGTAACATAGCAGGCAATCCCTCAATTGAGTGACGTTTGAGAGCAACACTATGTGGACGTTTGAAAACTGGAAACCCAAAGGGTTGTGAGTTCAAGATTAACTATTAGTAACCATGTTTGGTGCTTCACTGTATCTTGACATCTGTACATAGCTTTGGCATGGCAAGAAAAAAAGGATTCATACCACAGCTGAAGTCTCATTTGTTGGGTAATCATGTTGTAACTAATACCATCAAGAGAACCCCACAGAAAAAGCCTTGTTATATTGTCTAAAGGCTTTacattgttgttttctttttcctttttttgttgaaaattttAAAGTCTTTTCTATGAATGTGTTCTTGTTTTTACGTAATTTTTAGAAGTGTACAATGATGAGTGGAAAGATTTACAAAATGATTGTTTTCTGATGAGGTTTGACTTGATATGATTTCAAATGTTTCCATTTTCTACAGGTATGACATGACATTTGACTTGAATTTAATGTTACCAACAAATAAGGCAGTTCTTTGCGTGAAGTAAATGTCTAAATAATTCACTGAAAGTG

Function

symbol description
znf576.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZNF576 (zinc finger protein 576).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1738 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZNF576 (zinc finger protein 576).

Ensembl:

ensembl_id ENSDARG00000078164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019795 True 2011 mRNA 0.45 5 25163443 25169845

Neighbor

gene id symbol gene type direction distance location
XLOC_009924 znf576.1 coding upstream 230 25137483 ~ 25163213 (+)
XLOC_009923 CU062628.1 coding upstream 28231 25133335 ~ 25135212 (+)
XLOC_009922 zgc:92590 coding upstream 33368 25126935 ~ 25130075 (+)
XLOC_009921 si:ch211-261d7.6 coding upstream 38492 25116827 ~ 25124951 (+)
XLOC_009920 zgc:66448 coding upstream 47971 25107344 ~ 25115472 (+)
XLOC_009926 wu:fe05a04 coding downstream 1987 25171832 ~ 25181542 (+)
XLOC_009927 hcst coding downstream 14362 25184207 ~ 25187809 (+)
XLOC_009928 tyrobp coding downstream 26727 25196572 ~ 25200757 (+)
XLOC_009929 NA coding downstream 37773 25207618 ~ 25213978 (+)
XLOC_009930 NA coding downstream 49590 25219435 ~ 25242310 (+)
XLOC_009913 BX539313.2 non-coding upstream 244486 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 265190 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 266332 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 282225 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 589642 24565734 ~ 24573801 (+)
XLOC_009931 NA non-coding downstream 64108 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 171571 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 171879 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05735304_05738483 ZNF576.2 coding CI01000027 null 5735127 ~ 5738924 (+)