CI01000027_05735304_05738483 (ZNF576.2)


Basic Information

Item Value
gene id CI01000027_05735304_05738483
gene name ZNF576.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5735127 ~ 5738924 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05735304_05738483.mRNA
TTATAAAAACTTCATTCTGAACACTGAAGTACGCAGAAACGGTTCAGTTGTGTTCTTACGTTGTTTATTAATTTGAGTGGCACTTTTTAAATATATTTGTATATATAAATTGTCTGTCTTCTCTTCGTTACAGTAAAAATTTACAGCAGGTGTACACTGAATCCCTAAGTCCTCATAATGGACTCTGACATACTGAAGATAGAGGAGATAGTAATGGGAGGTGGAGAGGCTGCTGCCCCTGCTGAACTGCCACCTGAGAAGACAGAGGATGCCTACACCACCTCCATTCAGGACCGTGCACCACCTCCTATCATTCAGTCATACCAGCATGAAAGCTTGCAGTGTTTCCAGTGTTTTATTACTTTCTGCAACTCAAAAGCCAAGGAAAGGCACATGAAGAAGAGTCATCGGGAAGAATACAAACAGCAACTTCAGCAGTGTGATACTCTGTTCACATGCTACGTGTGTGATCGAACCTTCCCCTCTTCTGAGGAGCTGACACAACATCAGTCGACCCACAACAAGGAGGACAAGCCCTTCAAATGTGCGCACTGTCAAGAATGCTTCCGCACTTTCTCAGAGTTAACAACGCATCGACGGCAGGTATGTCCTGAACGTCAGTTTGTGTGCAAAGAATGCAACGAGACATTTCGAAGCCCTGGACTTTTGCGCAACCATCGTTTGGCCCAGCACCCCGTGCCCCTGGAAGAAGAGGAAGCAGAGGATTCCACAAAGACCTACCGGTGTGGTAAATGTGGTAAGGGATTTGAAGAAGAGGCAGAGCTCCTGCAACACCAGGAGAACCACGCAGGTGACCGGCATTGCAACGGTGGCGCTGCCATCAAACGTCGAGGGAGGCCGCCGAAAACTGAGGCCACAGCTGCCGGTGAAAAGAAACTGAAGCGAAAGAAGAAGGAGGAAGAGGCAGAGGAGCCTGAGGAAACCAACCATTCAGAAGACGCTACTGCAACACCAGCCACAGCTGAATCGAAGACGGGAGGAAGACGAGGACGCCCAGCCAAGTCTACCCAGGAGCCCAAGACAGCAGATGACGAGGCAGAAAATGATGACAAGAAATCTGTTCCTGAGCCAGCTCGGCAGATCCCTTGCACTGAATGTGACCTCACTTTTCCCACTTTGACGCAACTTCGAGCACATAAGAAAGAGAAGCACACGCAGCGGAAGCCTCATCCTTGTGGAGAATGTGAGGAGAGTTTTAACCGACCTGCGCAGCTAGAGGCCCACATGGCAAGGGCACATAGTGCTGGTCGGTACACCTGCCCCACCTGCGGGAAAAGCTTTGGCAGAGAAAGTAACCTGAAGGCTCATCAACAGAGCCATGGAAAAGAAGAGAAGCCAGTCGGAAAGAGATAATTAATTTTGGGAGAATTTTGAGGGTCTATGTTAACAGAAGATGAATTCGATTTTTAAAATTTTTGTGCATAGAAATGTAGGTGGGGACAGGGTTCACTTTAGATTTGAAGTTGTAACATAGTGGGGATCCTTCAACTGTGTGACGCTCGAGATCAACACTATGTGAACATGTTATTTGAAAACTGGAAACCCAAAGGGTAGTGTGTTCACGGTTAACTAATGGTATCCGTGTTTGGGTGCCTCATTGTATCTTGACATCTGTACATAGCTTTGGCATGGCAAGTAACAAAGGATTCATACCATGACTGAATTCTCATTTGTAGGGATAACCATGTTGTAACTAATACCATCAAGAGAAACCCACGGAAAAGCCTTATTATATTGTCTAAGGCTTCACATTGTTGTTTTCTTTCTTTTTTGGAAAATTTTAAAGTCTTTTCT

Function

symbol description
znf576.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZNF576 (zinc finger protein 576).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05735304_05738483.mRNA True 1815 mRNA 0.46 4 5735127 5738924

Neighbor

gene id symbol gene type direction distance location
CI01000027_05724339_05733809 NA coding upstream 1268 5723434 ~ 5733859 (+)
CI01000027_05719979_05720814 NA coding upstream 13793 5719903 ~ 5721334 (+)
CI01000027_05711573_05714490 NA coding upstream 20554 5711477 ~ 5714573 (+)
CI01000027_05701396_05711410 NA coding upstream 23667 5700876 ~ 5711460 (+)
CI01000027_05691123_05698421 NA coding upstream 36507 5691017 ~ 5698620 (+)
CI01000027_05740951_05748956 NA coding downstream 2027 5740951 ~ 5748956 (+)
CI01000027_05757143_05758496 NA coding downstream 18089 5756982 ~ 5758881 (+)
CI01000027_05781043_05784234 KLHL38B coding downstream 41682 5780606 ~ 5784415 (+)
CI01000027_05789308_05795504 FBXO32 coding downstream 50232 5789156 ~ 5796059 (+)
CI01000027_05805062_05805690 NA coding downstream 66138 5805062 ~ 5806023 (+)
G140858 NA non-coding upstream 53668 5619656 ~ 5681459 (+)
G140946 NA non-coding upstream 124949 5609873 ~ 5610178 (+)
G140920 NA non-coding upstream 127012 5602529 ~ 5608115 (+)
G140929 NA non-coding upstream 167474 5566567 ~ 5567653 (+)
CI01000027_05563090_05579132 NA non-coding upstream 168657 5560351 ~ 5579146 (+)
G140894 NA non-coding downstream 11307 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 82886 5821810 ~ 5822331 (+)
G140869 NA non-coding downstream 167872 5906796 ~ 5911149 (+)
G140893 NA non-coding downstream 219365 5958289 ~ 5959908 (+)
G140875 NA non-coding downstream 274765 6013689 ~ 6017411 (+)
G140862 NA other upstream 14362 5712612 ~ 5712702 (+)
CI01000027_05071693_05072917 NA other upstream 661991 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 664259 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 679188 5050310 ~ 5055755 (+)
G140440 NA other upstream 949467 4780417 ~ 4785660 (+)
G140924 NA other downstream 224282 5963206 ~ 5965326 (+)
G141052 NA other downstream 532443 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 967453 6705983 ~ 6708513 (+)
G141082 NA other downstream 1159487 6898411 ~ 6900923 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009925 znf576.2 coding NC_007127.7 CM002900.2 25163443 ~ 25169845 (+)