CI01000027_05563090_05579132


Basic Information

Item Value
gene id CI01000027_05563090_05579132
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5560351 ~ 5579146 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05563090_05579132.mRNA
CTATAAATGTGAATTTATACATTTTTTTTAGACACATACAATGCATTTCTGTGACACATGACCTGATTATAGTATTATTTTCCAAAGGATACCATTAATATATATGGCATGTCACATTAAGTGGATAATACAGTTTGACGCACAATATCCCTGACAATATTGTTTTATTTGTTGTTTAAAGGGATAGCTTACCCAAAAAATTTAAATTCTACCATTTTTTTACTGGTCCTTATGTCATTCCAAACCTGTTTGACTTACTTTCTTATGCAAACATGCAAAAAATATTGTGGCTCAAAAATATTTTGATACTTTGTTTTGTCTATTCATTGAAAGTCAATGGGGTTCAATGTTGTTGGACCCTAGAACATTGGACCCCATCAACTTTCTCTAAATGAATAAAATACATTTTTCAAAGTATCTTCTTTTGTGTTCTGCAGAAGAAAGAAAGTCATACAGGTTTGGAAATGACAGAATTATATATATTTTTTTGCATGAACTATCCTTTTAATGTCCATTTTAACCTGCTGCAAGTGGATTCAAATGCACAAAATGCGATGCTTCAGGTGCTGAAAAATATATGTAGTACTGTGTGAGCACATTAGTGCACAAGTAGCTATAGCCGTTTTGCTGTACTGATGTAGCCGTGCGGCATGTCAGGAAGACTGAGCGTAATCTGATGAGACGTACCCGCAGATTGATTAACAGAAGATTGCGGCAAACGCGGGGAGTAATATTTTCTAGCGCTTTATCATTTTGCTAGCCTGATGCTCTGTGGCTTCTCACCCTGTTTGAGATTCTGACCCTCCCCCTTCGTTTCCCATTCCTTCCTACTCTCGACTCTCTTCTCCTCTCCCCTTTGCCCCCTCCCTGCTCCCTCTGTCTCTCACACACATTTCATCTCTCAGACGCACGCATACACGAGCGCACAGACTGCGAAAGAAGGGGGGCAGGGGTAGTAACGGAGACACGATGCCTGAAAAAACGTGAGCGAGGGAAAGCGAGAGAGAGAGAGAATAGGGATGTTGTAGGCTAGGGAGGGACTGAGAGGAAAAAAGCGAGAGTTTGAGATTGGGGACAAGGCATGTGAGTGCTTGAGATGCTGAGAAGAGAGACAGAGTGATGGAAGACTCGAAGGCAAAGGCAGAAAATGTGTGTGTGCGTTTAACTTTTCGGAGTCAGACACATTTCCGCATCCTTCATGCTGCACGAGTCAGCGAATGTACCTTTGATTTTTCCAAAGGAAAAGCTCCTCAGGCGGATGAGGTTTTCCTAAAGCTCCTTAGTGAGGGTGAAAATCTGGACAGCGCAATGCAGTCGGCGCCCTTTTTCCAGTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGCTCGTTTATTAGCACAGCCTTGAATTGTTATCAGTGCTTTATCGATGTCGATGACAGTCTTCGTTTGTGTTGGGGCCATATTCTTACCGAATATAATATAAGGAATGTAGACTCTTGTTTCAAAACACTGGATCGCATATTCAACAATGAACCGAGAGTAACGGAGGCAGGGAAAGTAGGAAGAGGCTATGACGTGATGCTGAAGAATATCTTGATGACTGAAATTATGCCTATAGTGGAGGAATTTGACGAGCAGACAAATGATGATACAGTGTATGAGTTCAGGTTACAGGCTGCAGCAAACAATTTCATTGCAGCAGCCTCAAGGCTGCCCAGAGTGAAGCAAATCACTGTACAGGAAAACAACATGACTCAGATGTGGTGTAAGGTCCCTTTCCTGCTGCCCACAGATGCAGAGATTGTCTGGAGATATGCAGTGGAGAGAACGATGTTGATGGATCGGTTTGATGAGGTCACGGTTGGAGTGGATCCACTTTACTTCATCTCCTCTGCCCGGCCAGAGCACTCAGGCACCTACCAGTGTGAAATATTCTCTCAGGAGCACTCTCTGGTCCGTATCTACTACTACCTCACAGTGGTCCCTCTGGCACAGTTAGGCCATGTAGAACTACAGGATGTATTTGAACAGGCTCTCCTCCCAGGAGGCCAGTTCCGTCCCCTGTCCCCTAAGGATCCATTTACCTTGTGGGTGCCCAGTCCTGCCCTTCTCACCACCTGTCTGACTGCAATGTTTCTGCTTGTCTTCCTCATGCTAGGGGTGCTGTATTGGTTATCCAATCAGATTGTGATCAATGATTCTGATCCAGTCCAAGAAACAAAATCCACAGAAAAAAATAAATATTTTATTCACTGTTGAACATGGGAAAAGCA
>TU160120
TATGATGGATGTGGATGGAGGCACTTTCTTCAGCTTCATACTCATGACCACTGTTCACTGCCATTATAAAGCTCGGATGCATCAGGATATTTATTAATATACCTCCGTTTGTGTTCATCAGAATGAAGAAAGTCATATGCACCTAGGATGGCATGAGGATGAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCTTATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGAAACTGAAAACTGGAGTAATGATGCTGAAACTTCAACTTTGCCATGCAGGAATAAATTACATTTTAAAATATGTTTATTTTAAATTGTAATAATATTTTATAAAATTACTGTATTTTACTGTATTATCAATTACATTCAGCCTTGGTGAGCATTAAAGACTCCTTTCAAAAACAATTAAAAATCTTACAGACCACAAACATTTACGCTTTTGCAAGTGTATATATATAAATCTATCCATATAAAACCTACCCTGAAAAATAATGTTACCTAGAGTGCTAACTATCCCCAGTCTTTCCTATTTTGTAGCACAACCATCCTTCTCCAACTCAAACCTGAGTGGAAATTTTCCTGACATTTGTCTGGTGACTCGAGGAAGCGGATGTCTTGCCACGTGATGAGCGGTTCAGTTGAGAGTGACTTAGAAGTGTGGCCACCCGGGCCCTGAAATGGGGGGACCTGCACCAAGCACGGTGACGTCATTCCTCCAGCAAGAACCTCAGTGCTTTGTCTCATTGTGCTCCCTTATTGCAGGCATGCAGTACACTGGACAGCATTGCAGCGTCCGTGCACACGGAGACCGCACAAAGCAGCTCAAAGTAAAAATAAAAAAGAGATGTAAAAAAAATACAAAAGAAGTAAGGGGAGAACATTAGAAAATATAAAGGGCGAAAGGAGATGGAGGGGTAGATATTTAGAGAAAATAAGAAGAAGCATAGAAATGAACATGAAAGAGAACCAGATAAAGCACAAGCTTTTGCAAATAACACCTAGACTGCCTGCAGTCAGCAACACTAATAACAGCTGTTGCCATCCCTCTGTGTTGTGGAAATGGAGGTTATTAAGCATTCCCTTTGAATAAGCTGCTGTAAAGCTAATGTACAGCCGATCCATACTAGTGGGCCTTTCATGTTCCTGCGCATCAATGTCTGAACGTCTTTATCTCAGACTGTACTAATAAAGATGTCTGCAGCAGACATTTTGGCTCCAGAACAAGGGGCTTTCATACCCGCTGGTTGCGATGGCACGAAAAGGGGCTATTCCCTCTTAGCTCTTCCTCATTGCTATTTGAGCCTATCTTTGTCTTTGTTACTGTTCGCTCTCAAAGCAAAACGAGTAGCCACCCCCACTCACTGTACCAGCATGTCATAAATCATATTTAAACGCTACACCTCCACTGAGGCTGTGGGACTGGAGTGTGGCTGGCTAAAGAGGCCATGTGAGGACAATGCAGCATTTAGTCTTAGAAATGAATGTTTGAAGCAGATTAAATTGTTTCTAACTTTTGATTTTTCCAGATAACTGTTGATGTGCTATGATTTTGCTATCATTCTCAGATGCATAAGTGCGTGTATGTCTATAAATGTGAATTTATACATTTTTTTTAGACACATACAATGCATTTCTGTGACACATGACCTGATTATAGTATTATTTTCCAAAGGATACCATTAATATATATGGCATGTCACATTAAGTGGATAATACAGTTTGACGCACAATATCCCTGACAATATTGTTTTATTTGTTGTTTAAAGGGATAGCTTACCCAAAAAATTTAAATTCTACCATTTTTTTACTGGTCCTTATGTCATTCCAAACCTGTTTGACTTACTTTCTTATGCAAACATGCAAAAAATATTGTGGCTCAAAAATATTTTGATACTTTGTTTTGTCTATTCATTGAAAGTCAATGGGGTTCAATGTTGTTGGACCCTAGAACATTGGACCCCATCAACTTTCTCTAAATGAATAAAATACATTTTTCAAAGTATCTTCTTTTGTGTTCTGCAGAAGAAAGAAAGTCATACAGGTTTGGAAATGACAGAATTATATATATTTTTTTGCATGAACTATCCTTTTAATGTCCATTTTAACCTGCTGCAAGTGGATTCAAATGCACAAAATGCGATGCTTCAGGTGCTGAAAAATATATGTAGTACTGTGTGAGCACATTAGTGCACAAGTAGCTATAGCCGTTTTGCTGTACTGATGTAGCCGTGCGGCATGTCAGGAAGACTGAGCGTAATCTGATGAGACGTACCCGCAGATTGATTAACAGAAGATTGCGGCAAACGCGGGGAGTAATATTTTCTAGCGCTTTATCATTTTGCTAGCCTGATGCTCTGTGGCTTCTCACCCTGTTTGAGATTCTGACCCTCCCCCTTCGTTTCCCATTCCTTCCTACTCTCGACTCTCTTCTCCTCTCCCCTTTGCCCCCTCCCTGCTCCCTCTGTCTCTCACACACATTTCATCTCTCAGACGCACGCATACACGAGCGCACAGACTGCGAAAGAAGGGGGGCAGGGGTAGTAACGGAGACACGATGCCTGAAAAAACGTGAGCGAGGGAAAGCGAGAGAGAGAGAGAATAGGGATGTTGTAGGCTAGGGAGGGACTGAGAGGAAAAAAGCGAGAGTTTGAGATTGGGGACAAGGCATGTGAGTGCTTGAGATGCTGAGAAGAGAGACAGAGTGATGGAAGACTCGAAGGCAAAGGCAGAAAATGTGTGTGTGCGTGAGTGTCTGTCTGACAGGGAGGACACAGTCTGAGGGGCTCGTGGTGCTGTAGACTATAGGATTGCTGTAGGGGAGGTAGGTTGTGTGCTACCTATGGGATCAGTGTGATTGTCTTTGCTCTACCTGCTTGTGAGCTCATTGTCTGTGTGTCTGACTGGCTGTCTGACTGTTTTTCTCTTTCCATAGAAAGAGGGAGAGATGACCAGACACTTAGATTGGACCTATAGAGAGTAGAAAGGATGGACGTTTTCTCGTTTTCTTTCACTTTGTCTTTGTCTCATCAGGTTTAACTTTTCGGAGTCAGACACATTTCCGCATCCTTCATGCTGCACGTGAGCTGTTTTTTTCGTCTTATTTGCTTAGTTTTCGACAGACTTCGTATGTCGACATGCACTTTTTTTCGCCACAAAGGTTGACATTGTCAAAGTCTGCATGTCCAGATGCCATGATAAGGTAGTGTATCTCCTTTTGGATTTTTGCCATTCACCTTTGCTACATCATCATGCATTTTTTTGGGGCACAGCAGAGGCTTGTATTTGTCGTAGACAGTTTATTGTGGCACTTGTGATTGACACACCTGTGCACAGATGATGTGTCTCTAATGCAGAGATGGAGTGATGCTTTGAAGTACGCTTGTTTGGTTTATTAAAAGCGTGTTTTTTTGGTATGTTTTAAAAAGACAATAGAACTGTGGGTTTAACTACTACTGCAGTCATTTTCATTATTCATGACACTGTGATGTTTGAGAAATATTTTATCATCATAGTATTTTTGAATCTGTATACAGTCTAGTGTTGCATGTCTACAACCGCCTAGTCTCAATCAGTGTCGACTCACACATTTTATTTTATTTTTTTAAAGAAACATTTTTATTATTGATAATCTTTCCCCATTTAGTGATGGTCAGGATGACGAATTTTAACAGTTTGGTGTCTCTACTCACTCAGTCACTGTGTCAGTTGTACCAGCTGTCTGCCAAGAAGGGGCACTATTGCACCATTTTATCTTCTTCGGGTCCCCATTTGCAGTTTGTGCACTGTGTAACATGAATCCACTTGTTTAGCCTCCTAAAATGTTAATATTGGATATATTCATATTTGTATTATTTTTATCTTAACAGGTTTCAACCAAACACCTGGACATTGGGGGGAAATTGGATTACTTCCACATACTGTTGCTGTCGCTATTCCATTTAGCCCTGTCCTCATGTTACCTGGTGACAGCTGAAGGTGCCGTTCAAGTGTTAACATGGTTCTGGCTGTTTTTTGTTGATGATTTATGGCTTTTTATTTAATGATTTACTAAGAATTACTTCACACTCTAAGTTCATTTTATTTGATCAGTTTTTCTAATGGTTGTTATGTAATATTGCGGAGAAATCCTCTATCTTTGTCTCAGGAGTCAGCGAATGTACCTTTGATTTTTCCAAAGGAAAAGCTCCTCAGGCGGATGAGGTTTTCCTAAAGCTCCTTGTAGATTCGTGCAGAGGATGATGCCACTGCTTACAGCCTCTGCGGTGAAACATATTGCAGTAAAAGTACCCATCAACAACACCCCATGGTTTTATTATGACTGACACAACACAGTTTGGTGCAAACATTATGTGTTTACTGCTCTCTGTGTGCCTTCACTGTCTGAACAGAGTGAGGGTGAAAATCTGGACAGCGCAATGCAGTCGGCGCCCTTTTTCCAGGTGCTTTAAATGTTTTGAAGGCATCAGTAAAAAGAAAACATGTTTGAAAGCATGACGTATTTGTGCATTAATTCCAGCAACATGGTCCTGTTTTTTCACAGTATGTCTCTTTGTCCCTGAGACCCTTAACCTGTGAGGTCAAACTAGGTCACAGGTGAGGTCCTCAGGAACAGGGCTGCATGCGCCGTCATCCCAAAAAGTCAAACAAAGGGAAAACATTTGCCTTTTTATTGTGTCTTTAAATCAATTTTAACTGTATTATCAGAACCTGATTAAACATGCTGAAAAAGAGCAGTTTTATGTGTAGATTTGGAGTTCTTACACTGTAAATTATTAGATTGTGCTCCAGATGAGGTAGTGAATACTGGGGACACACCCTATTGGCTGGCTTTATTTTCTACACAAAGAAATGATCCAATGAGAAGACAGCCAAGGGTGGTGACCCCATAATATTATCAACACTCATACTATCATTCGGTGCATACAAGACAAGACAGATATATTTATGGACATACTGTACAGAGTTGTTGATGCAAATATGTCAATATGCATTATCATCTGATGCTCTCATAGTACCTTGTTTTTAAATATCAGTGAGCTTTCTTACTTTTATGTGCGTAATTGGTTCATGCTTATCAATGAAGCTATTTTTTTTTTTTTTTTTTTAAATCATTAATGAAAGAGAAATTAAACATCCCACAAAGAGAATTTTTAGTTGTTTGGTGCAATTATGTGTTTACTGCTCTCTGTTCACCTTGACAGCTTGAATGAAGTGAGTGTGAAAATGTTACTGAATCTGAGCGGCGCAATGCAGTCCAAACCCCTTTTTTCAGGTATAATTTGTAATACTTATCAATAGTCCTCTTTTAAACTGATGCAAAAGAAATTCAAGCACAAGTTGTAATTGCTGCATAACATGTATATTGTGACTGCTTAAATTAATACATGGTGTTAACTAACCACATAATGTGTATTATATTATAGCTGTATATTACTGTCATATGGACATTACTTTGACAAACTCATTTTGTATATTGAAACAAGCATTTTCTGTAAAGCTGCTATGTGCTATATGTATTGTGAAAAATATTATACAAATAAACTTGAATTGAATGGAAATGAAACATCCCACAAAGCATCATCGAAACATGTTAGACGCAAAGGTTTCTATCATGGCTGTCGATAAATCCCAAATATAACATTTCATATTGTAGAAAAATGTCACTGTCCCACATGTGACGCACATTCGAATTCACACATTGAAAAATGAACCCAAGAAAAAGGGACACCGACACTCCATGATATGTTAATTTTTCAGCACACCCTCTGTGACTTTATGGCCTCCTGTTGGAAGGCCAGCTGTAGAATAAGCATCTCAGGACAGTGCGGCGCAATGCTACCTGTCTTCTGATCATTACTTATAGGCCGTCTCTGGCAGGCCTGCGGTGGGGCTCCTGCTCACTATTGATTGGCTTGTCTTTGCAGAGACAGATGAATGCATTAGTACCCAAGTCGCTCCTGCCACGGGAAATATATTAACTTCATGTATTAGGCACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05563090_05579132.mRNA False 2276 mRNA 0.43 12 5561971 5579146
TU160120 True 6033 lncRNA 0.39 2 5560351 5566470

Neighbor

gene id symbol gene type direction distance location
CI01000027_05542184_05551414 NA coding upstream 9925 5541415 ~ 5553150 (+)
CI01000027_05489565_05492924 NA coding upstream 69002 5489565 ~ 5492969 (+)
CI01000027_05483140_05487852 NA coding upstream 73384 5482874 ~ 5488587 (+)
CI01000027_05461577_05471900 YWHAZ, YWHABA, YWHAB, 143B1, YWHABL coding upstream 89079 5459593 ~ 5472892 (+)
CI01000027_05444238_05445884 NA coding upstream 115760 5443883 ~ 5446211 (+)
CI01000027_05612215_05613339 FPR1 coding downstream 32108 5611254 ~ 5613416 (+)
CI01000027_05624635_05626386 NA coding downstream 45380 5624526 ~ 5626605 (+)
CI01000027_05654573_05657504 NA coding downstream 75427 5654573 ~ 5657504 (+)
CI01000027_05657678_05659351 NA coding downstream 78532 5657678 ~ 5659351 (+)
CI01000027_05659449_05662678 NA coding downstream 80303 5659449 ~ 5662957 (+)
G140933 NA non-coding upstream 82756 5478962 ~ 5479215 (+)
G140843 NA non-coding upstream 149236 5412427 ~ 5412735 (+)
G140832 NA non-coding upstream 149669 5411282 ~ 5412302 (+)
G140739 NA non-coding upstream 185435 5370761 ~ 5376536 (+)
G140920 NA non-coding downstream 23383 5602529 ~ 5608115 (+)
G140946 NA non-coding downstream 30727 5609873 ~ 5610178 (+)
G140858 NA non-coding downstream 40510 5619656 ~ 5681459 (+)
G140894 NA non-coding downstream 171085 5750231 ~ 5753375 (+)
G140950 NA non-coding downstream 242664 5821810 ~ 5822331 (+)
CI01000027_05071693_05072917 NA other upstream 488835 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 491103 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 506032 5050310 ~ 5055755 (+)
G140440 NA other upstream 776311 4780417 ~ 4785660 (+)
G140436 NA other upstream 782633 4737398 ~ 4774262 (+)
G140862 NA other downstream 133466 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 177836 5756982 ~ 5758881 (+)
G140924 NA other downstream 384060 5963206 ~ 5965326 (+)
G141052 NA other downstream 692221 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1127231 6705983 ~ 6708513 (+)
G140929 NA non-coding downstream 97 5566567 ~ 5567653 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location