CI01000027_05483140_05487852


Basic Information

Item Value
gene id CI01000027_05483140_05487852
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5482874 ~ 5488587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05483140_05487852.mRNA
ATATAAATGGGTTATTTTGCTACATAGTTGCATCATGTAAGTCGACATTGCTATTTAAACTAGGATTGCTGAGTCATTCATTAGTAAGTTATGGCTGTCGACAGTCCGGATATGTGAGCTATTAGTCATTAATTTATTAAAAACTATAAACGTTAGAATGGCAAATATTCGTTTTGAACATTAAGAAACTGTCTCCAAAGCTCTGCAAGAATAGTCATAATAGTAAGACGTCCAGCACTCAGTATAACAGTATTTAGCAAGCAAGCATGTCGGAGTCCGGTCACAGTCAGCCCGGTATGTACGGACAGGGAAGGAGGAGGAGGCGACGGCGAGACCGAGACCCAGGACCGCCGGGTCAAAACCTCTCCGGCCCCAGTCGTGATCGAGACTATGTTCCCCGTGAGCGCAGGTCCAAACCAAGTGCTCCAGCGAGTGGAGCCCCGTCTTTGGAAAAGCCGATCATGCTCATTAAGACCAGAGATGAAGGGGGGAAACCTGGGAACACTCCTGATGTGCCTCCTTCAGCCTCAGGTGCAGGAAGTGTCAAACTGGAGAGGGAAGGTCAGCGGCCAACTCAACCCGTGTATCAGATCCAGAACAGAGGCATGGGCTCAGCTGCGTCCGGTGGAGCTGTGGATCCTGTGATTGGCCAGACTAAGCTCCTCCCCCCTGAGAAGATGAAGCACAGCATTAAGCTGTATCTGCGAGACCAGACGGATATGTTGGTAGTGGGAGTTATTGGGCTACAAGGCACAGGCAAGTCCACAATCATGTCTCTCCTGTCTGCAAACAGCCCTGAGGAAGACCAGAGGGCGTATGTATTCAGAGCTCAGACGCAGGAGATCAAGGAGAGAGCTGGGAACCAGAGCAGTGGAATCGATTTCTACATCACTCAGGAGAGGGTCATCTTTCTGGACACACAGCCAATTTTGAGCCCTTCAATTTTGGATCATCTCATTAACAATGACCGCAAGCTTCCGCCTGAATACAACCTCCCACATACATACGTGGAAATGCAGATCACTGCCTTCCTCTTTACCGTATGTCATGTTGTGATTGTGATTCAGGACTGGTTCACTGATATCAACTTGTATAGACATTCACAATTCCAGTATAGGAAACTAGTGACTCTTATTTTGCCTAAAAATGTTGCCAGGTTTCTGCAGACTGCTGAGATGCTGAAACCCTCGACTCCATCTGCCAGTCACGACAGCACCGGCTCCTCAGGGGCAGATGATGGCTCTGAGTATTACCCCCACATAGTGTTCTTGCAGAACAAAGCGAGGAGGGAGGAGTTCTGTCCACGAAACCTGAAGAAGATGCATATGGCAGTTGACAAGCTTATGGCCCATTCCCACCTAAAATATAAAGGCACATTATCCATGCTGGATTGTAACATATTCCCGGGACTGAGTCGAGACTACTTGGAGGCAGAAGTCAATCTTTTCCTCTTGCCTATGATGGAGAATGATGGTGAAGATGCTTTGACAAGAGCAGGTTCAGGCCCCCCTCTTTTCTCTCTGCTGCCTGGTTACAGAGGTCATCCCAACTTTTCTTCTCTGGTTTCTAAATTCCGCAGTCAGATCCTGGCTATGTCCCGCAGTCAGCTCTCACACACAATCCTCACTGAGAAAAACTGGTAAAGCACACCCCAGACATGCTTCTGTTCTTCCTTTTGGAAGTGTATTCTTTATTTAAATGAACATTTTGACATCATTTTGAATGAAATATTTCAATTAAAAAAATATAATTTCCATTTATGCATGTATATTTAATGTCATATTAAGACAATGGATGGCTCCATGTGTTTTTATAGGTTTCACTATGCAGCTAGAATTTGGGATGGTGTTAAGAAGTCATCTGCACTCTCAGAGTATAGCCGACTGCTGTCATAGACATGATGGTGTCATGAAGCCGTTCATTGCTAAAGAGGACTGGGCCTCTGCTCAGATGATTTCAGTCAGGAGGCCATTCTCGGAGAGAAGATTGGGCTACTGAAGTGCAGTAGCGCTGAATGAGGTTTAACTAGCTTCTTCTGTGAGGCCTGGATCACAACAGTGGAGTGCTTTACAGTTTGGGAGGAGTTGTATTCTGAGTTGTTTATTTTATGAAAATTAGCAGGTTCCTGACAAGGTCCATCCAATCATGTGCTAAACTCATTGTTATTGCATGAGATGATGTGCAAAGATGTTAACATTTTTATTTATATAGTAAAAATGTGAAGAGGCCTGTGATTTTTATATTTTATTCAACTGATGTAAATGAAACAGTATGATACAGCACACGTTGCTTTTCAAATATGTGTTTGAACAAAAAATTGTAACTTGGATGCAATTGCAGCATGATTTTTTCCATATAAATGATTCATGAGATCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05483140_05487852.mRNA True 2378 mRNA 0.44 11 5482874 5488587

Neighbor

gene id symbol gene type direction distance location
CI01000027_05461577_05471900 YWHAZ, YWHABA, YWHAB, 143B1, YWHABL coding upstream 9982 5459593 ~ 5472892 (+)
CI01000027_05444238_05445884 NA coding upstream 36663 5443883 ~ 5446211 (+)
CI01000027_05398796_05408689 NA coding upstream 72807 5398408 ~ 5410067 (+)
CI01000027_05272101_05283619 NA coding upstream 198933 5270331 ~ 5283941 (+)
CI01000027_05205628_05209568 NA coding upstream 272704 5205087 ~ 5210170 (+)
CI01000027_05489565_05492924 NA coding downstream 978 5489565 ~ 5492969 (+)
CI01000027_05542184_05551414 NA coding downstream 52828 5541415 ~ 5553150 (+)
CI01000027_05563090_05579132 NA coding downstream 73384 5560351 ~ 5579146 (+)
CI01000027_05612215_05613339 FPR1 coding downstream 122667 5611254 ~ 5613416 (+)
CI01000027_05624635_05626386 NA coding downstream 135939 5624526 ~ 5626605 (+)
G140933 NA non-coding upstream 3659 5478962 ~ 5479215 (+)
G140843 NA non-coding upstream 70139 5412427 ~ 5412735 (+)
G140832 NA non-coding upstream 70572 5411282 ~ 5412302 (+)
G140739 NA non-coding upstream 106338 5370761 ~ 5376536 (+)
G140838 NA non-coding upstream 115243 5367383 ~ 5367631 (+)
G140929 NA non-coding downstream 77980 5566567 ~ 5567653 (+)
G140920 NA non-coding downstream 113942 5602529 ~ 5608115 (+)
G140946 NA non-coding downstream 121286 5609873 ~ 5610178 (+)
CI01000027_05071693_05072917 NA other upstream 409738 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 412006 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 426935 5050310 ~ 5055755 (+)
G140440 NA other upstream 697214 4780417 ~ 4785660 (+)
G140436 NA other upstream 703536 4737398 ~ 4774262 (+)
G140862 NA other downstream 224025 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 268395 5756982 ~ 5758881 (+)
G140924 NA other downstream 474619 5963206 ~ 5965326 (+)
G141052 NA other downstream 782780 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1217790 6705983 ~ 6708513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009908 smg9 coding NC_007127.7 CM002900.2 24721556 ~ 24733321 (+)