CI01000027_05461577_05471900 (YWHAZ, YWHABA, YWHAB, 143B1, YWHABL)


Basic Information

Item Value
gene id CI01000027_05461577_05471900
gene name YWHAZ, YWHABA, YWHAB, 143B1, YWHABL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5459593 ~ 5472892 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05461577_05471900.mRNA
GCATAAATGCCTGGCGTGTTGGTCCTGTATTCATTGTTTTATTATTTTTGATGAGAAATGAGTTGTAAATGGCGATGGACGATGCAAGGCACAGGACTGAGTTGCGGATGCTAACGTGCTGAAAATGAACAATAAGCCTTTGCTTGGCAGATCTAGGCCGCCCCTTTTTGTTTCTTCCTCTTGGTGTGTTATCTGGTGTGAACGAGCTTACAGTTAAAATTCATCCCCAAAATGTTACGTTTTATTTTTTATATCTTAGTATGATCGTCAGTAACAGTTTTCCATATGCGTCCTTGTGTAAAATACAGTTTCAGTGCATTTTTTGGTGCTGAAACAAGCCGAAGCCTTTCACATGTCTGTGTTCTCAATTCTGCCACTATTAATTCAGTCAACTGTACTTGGTCCTGCCATGTTAACACATTTAATGGAACTCAATAAATATACTTATTTATCTTCGACTATTTCGGGTAATTTGGTTGATAATTTTAGGCGAGCTTTCAACATGCATCTGGTAATCGAGAGACCCGCCAGACAAACGGCGCCGTCCATTTGCTTTATCAGCCTTACCTCCACATAGATAGAGATTGTTTAAATGATTAAAACACATTGGCGGTTTTTTGACATTACAGATAGCAGCGGGTTTCTTTGCTGAGGTCAGTCGGCCATGAAGATGGGCAGGGCAGACCTGTCTTCATCATATGGCTTAGCCAACAAGCTAACTTGGTTTTATCATGAAAACAGCGATAAATTATGTTATCATGACATTTTAGCTTGATACATTTGCCATACAGAGTACTTGAAAGAGCATCACTATTGCTTGTGTGCATTTCTCAATGAAATAGGCGTAATAAACAAGTCACAAACCTCTAGTATGGTGTTGCTGGTTAAGCTTTGTGTAGTCAGCAAGTCACTGAAAGCGACAGCGACGTATATTTTGGTCCCTCGCAACTTCAAAAGGGATAGTTCACCCAAAATTGTTATCATTCGCTTAAAATTGTTTCAGACGGACGGACAGCTTCAGTCGCCATTGACGATTATTGTATTTTTTTTCCCCCCATACAATGGAAATGAATGGTGATTGAGGCTGTCTTTCTGCCAAGCATATCTTTCTGTGTTTCACGGACTAATGGAAGTCGTACGGGTTTGAAACGGTATGAAGTGTAGTAAGTGATGACCGAATGTTCTTTTTTTTTTCTTTTTTTTTTTTGGTGAACCATCCCTTTAAGACATATGTAAAGCGCGTGAATGGCTAGCTATGGGAATTGGGCGTGGTTGTCGAGAACAGCACATCCGCATATTTCTTCGCACTGTAATGCGACCCTGTAGGGCAAATACTTATGGCCTAACTTTTTTTTAAAGCTGTGTGCAGGAATGGCACATAGAATTTTTTTTAATCAGATCTTTGGATGTTTGCAAAATGCTTTGTGGTTCAAGTCTTAAACCTAAAGTATAGTAGATTTTATGTGTTGTATAATGCATGAAAACAGTATATTAGGCATGTTACACAACATATTAAGCAATTGATTAAATATATGCACTGCACTGTCAGTAGTAGCAGCAGCAGCATTTGGGGTATCCTGTGTTGCCTGTGGCAAACTAATTGATTCGCTGCTGTGGAGTTTTTCAGCACTTTGCAAGGGTGATTGTCCAGTTGTCCAGATTATTTAGTTTCTATTCTCAGTAGTGGATTTAGCATCAATAATCAGACAGATGTCACCACTTGAACATCCAAAGGAAGTCTAATCAAGCAAACTAGTGAAATATTAAAGTGCATAGATTGTTATTCTTTTGGATTACTATTAAGTTAAGCTCAAGTTAATTCATTACAGTAGATTTGATTTGGTTAAAAGGAACATTTTCACATGTCTCACTTGATTTTGTGTAACACTAAACCTTTGGGGTGTAGTTGTAATTAACCTGTTACACCTAAAATAATTCAGATTGAGTGTCTGATTGAACTATTTCTCTTCAGCACTGAGCAGCCATGGACAAGAGCGAGCTAGTGCAAAAAGCCAAGCTGGCCGAGCAGGCAGAGCGCTATGATGACATGGCAGCCGCTATGAAGTCCGTCACCGAGGGTGACATTGAACTGTCCAACGAGGAACGCAACCTGCTATCGGTGGCTTACAAGAATGTGGTGGGTGCCCGCCGCTCCTCCTGGAGAGTGGTCTCCAGCATCGAGCAGAAGACGGAGGGCAGCGATAAAAAGCAGCAAATGGTCAAGGAATATCGGGAAAAGATCGAGAAGGAGTTGAAGGAGATCTGCAATGACGTACTGGTTCTTCTGGACAAGTATCTCATCCCCAAGGCGACCCCAGCTGAAAGTAAAGTCTTCTATCTGAAAATGAAAGGCGATTACTATCGTTACTTAGCGGAGGTGGCTTTGGGAGAGGAGAAAAACTCTATCATTGCCAATTCACAGGAGGCCTACAGGGATGCCTTTGAAATCAGCAAGGCGGAGATGCAGCCCACACACCCCATTCGTCTGGGCCTTGCGCTCAACTTCTCTGTATTTTACTACGAGATTCTCAATTCGCCTGAGCAGGCCTGCAAGCTTGCCAAAACGGCTTTTGATGAGGCCATTGCAGAGCTTGATACACTGAATGAAGAATCGTACAAAGACAGCACATTGATCATGCAGCTACTGCGGGACAACTTGACACTGTGGACTTCAGATAACCAGGGCGATGGCGAAGACACCGAGGAGGGCCGAGAAAACTGAGTCTCGCTCCGTCCATCCTTCCCCTGTTATTCACCTGCCATCGTTCCAGCTCACCATCAACACTGAGACCACCTCATCGTCGACTTCTGTCTCTTTTAGTTCTTTTACTCTCGCGCCTTCCTTGCTTTCTTCCTTCCATGTCATTGTGGGTTTTTTTCTAAGGATTTGTGTAACGGGAGGTGGGTGGGAGGGGTTAAATAGGGGCGGGTGGGCGTTGGGATGCGATTGGGATGGGGGACTGGGAGGGGGATGAGGTTTGTCTGCTGTTAACCTTGTTTTCTCTGTGGGGAGCTCTAGGTTTTCGCATTAGCGTGGAAGAATGCGGGTGAGGGCAAGTTCTCAGCTCATGCAAAGTTGCAAGTCAAACCCTTTTGTTATTCGTATACTGTATGTAAATCTCTGTCAAGGAGTCTGTGCATTTGTCATGGTCATTATGTACACCTGCAGTTTAGCGTCTGCATTATAAACAGCCCTTGTCTTCGAGTAGAGGTGGGGATAGCAGTGCTAGTCTTTAGCTAGGAAAGAAGCAATGGCAGCGTCACAAGTCAAATAGTGAGCTGCTCGCTCGCACGTCATGTAAAATGATGGGCAAAAAAAGGTTACATTCCATTTATTGTCACTTTCAAGTTTCTTATTCCAGGCATTTGGTGTCCTGCAAATGGCATTTACTTATTCCCTGTTAATTACGAGGTATAGAGGATCCTAAGAACAAAGAGCACATAAGCTTGATACTGTATGACTGTACAAGCAACGCAGTAGGAAATACTAGTGTGGTTAAATTTTCCAATAATGGTTTATTTTGTTTTTCCTTTTTCCATTCATTTCTTTTGATACTTGCCTAATTTGCATGTGGCTATGAAGTAGTTAATATGGGGAGGAAAGGGAGTACTGTCGGGCTGGCTAGCTTTGTGTCATGTCTCTGGAATTTTCATACAGAACACCCAAGCATAAATGTTATTTGGAGGGAAAATATGTAATTTCATGTAAGTGGA

Function

symbol description
ywhaba Acts upstream of or within phagocytosis, engulfment. Predicted to be located in cytoplasm. Is expressed in several structures, including nervous system; optic vesicle; otic vesicle; solid lens vesicle; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).
ywhabl Predicted to enable monooxygenase activity. Is expressed in head; nervous system; otic vesicle; post-vent region; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).
ywhaz Predicted to enable monooxygenase activity. Is expressed in several structures, including EVL; epidermis; nervous system; periderm; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta) and YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta).
ywhab Enables several functions, including histone deacetylase binding activity; identical protein binding activity; and phosphoserine residue binding activity. Involved in several processes, including cytoplasmic sequestering of protein; negative regulation of G protein-coupled receptor signaling pathway; and negative regulation of protein dephosphorylation. Located in cytosol and perinuclear region of cytoplasm.

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05461577_05471900.mRNA True 3714 mRNA 0.42 5 5459593 5472892

Neighbor

gene id symbol gene type direction distance location
CI01000027_05444238_05445884 NA coding upstream 13382 5443883 ~ 5446211 (+)
CI01000027_05398796_05408689 NA coding upstream 49526 5398408 ~ 5410067 (+)
CI01000027_05272101_05283619 NA coding upstream 175652 5270331 ~ 5283941 (+)
CI01000027_05205628_05209568 NA coding upstream 249423 5205087 ~ 5210170 (+)
CI01000027_05157946_05159188 NA coding upstream 300347 5156133 ~ 5159246 (+)
CI01000027_05483140_05487852 NA coding downstream 9982 5482874 ~ 5488587 (+)
CI01000027_05489565_05492924 NA coding downstream 16673 5489565 ~ 5492969 (+)
CI01000027_05542184_05551414 NA coding downstream 68523 5541415 ~ 5553150 (+)
CI01000027_05563090_05579132 NA coding downstream 89079 5560351 ~ 5579146 (+)
CI01000027_05612215_05613339 FPR1 coding downstream 138362 5611254 ~ 5613416 (+)
G140843 NA non-coding upstream 46858 5412427 ~ 5412735 (+)
G140832 NA non-coding upstream 47291 5411282 ~ 5412302 (+)
G140739 NA non-coding upstream 83057 5370761 ~ 5376536 (+)
G140838 NA non-coding upstream 91962 5367383 ~ 5367631 (+)
G140837 NA non-coding upstream 92289 5367034 ~ 5367304 (+)
G140933 NA non-coding downstream 6070 5478962 ~ 5479215 (+)
G140929 NA non-coding downstream 93675 5566567 ~ 5567653 (+)
G140920 NA non-coding downstream 129637 5602529 ~ 5608115 (+)
CI01000027_05071693_05072917 NA other upstream 386457 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA other upstream 388725 5067917 ~ 5070868 (+)
CI01000027_05050310_05055447 NA other upstream 403654 5050310 ~ 5055755 (+)
G140440 NA other upstream 673933 4780417 ~ 4785660 (+)
G140436 NA other upstream 680255 4737398 ~ 4774262 (+)
G140862 NA other downstream 239720 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 284090 5756982 ~ 5758881 (+)
G140924 NA other downstream 490314 5963206 ~ 5965326 (+)
G141052 NA other downstream 798475 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1233485 6705983 ~ 6708513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002662 ywhabl,LOC105896388,LOC102785026,LOC100692314,LOC107570839,LOC103145058,LOC105016475 coding CM030136.1 CM030136.1 25413831 ~ 25433868 (+)