XLOC_009931


Basic Information

Item Value
gene id XLOC_009931
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25233953 ~ 25235093 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021717
ATGAAATTACTCAAAGCGATATACTCCACTGAAGTGACAGCCTCTTCAGAGGCTCTCCCTGGAGGTACTTCAGCTTGTGATTTCCAGTCCGGGGCAGGAGGGTCTGAAAGCCACTGCTGTGTTTATAGTCCTGCGTTGTGGATTGGCAAACAGCAAGCCCCTGGCTGTCAGTCCATCAGCCCACTGCAGGGGCGTCTCATGCCCAGAAGCGTGTTTCAGCTCTTAATTACCTAACAGAACAGCTGGCCCACAAGTCTGCCATGTATTTGCTCACCTCAGCACGAGGACGTCTGCCTGTCGCCGTAAGGCATATCACCAGTTAAACCAGCTATAAACTGAGTGTCCATCTCCCAGCACCTCAGTAAAAAAATCCACAGCCTCCTGACAGTATCTTTAGACCAGACACATTTGGTTCTCTAATATTTTAGACTTGTATTATGTTGGATTTCTAGGTAGGTAGGAACACTATAGGTATTAAATCTTGTAAAACAGTATTGGTTTTGCTGTGTGAAAGCACACCAAAACAAGATATTTATAATTCACTGCATTGTACCAAAACACATAATTATTGAAATTGTCCATCCATCAGGTTTTAATAACCTGATGTTTTTAAGAGTTTGGGTCTATTGAGCTGCCATTAGCTGTGGACTTGCGAGTCAAATAGACTTATGAACATTGTAACCCTTTGACTGCCTACTCTAACAAATtgttgaccatgttttgactgttttaaataatgactgttaaagtcaatTAAAGAATGACCGTTTTAGATAATGGCTTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021717 True 785 lncRNA 0.42 2 25233953 25235093

Neighbor

gene id symbol gene type direction distance location
XLOC_009929 NA coding upstream 19975 25207618 ~ 25213978 (+)
XLOC_009928 tyrobp coding upstream 33196 25196572 ~ 25200757 (+)
XLOC_009927 hcst coding upstream 46144 25184207 ~ 25187809 (+)
XLOC_009926 wu:fe05a04 coding upstream 52411 25171832 ~ 25181542 (+)
XLOC_009925 znf576.2 coding upstream 64108 25163443 ~ 25169845 (+)
XLOC_009932 klhl38b coding downstream 10764 25245857 ~ 25250414 (+)
XLOC_009933 fbxo32 coding downstream 24220 25259313 ~ 25272633 (+)
XLOC_009934 si:dkey-29h14.10 coding downstream 50905 25285998 ~ 25295185 (+)
XLOC_009935 tbc1d31 coding downstream 61296 25296389 ~ 25315136 (+)
XLOC_009936 dync1i1 coding downstream 81880 25316973 ~ 25337834 (+)
XLOC_009913 BX539313.2 non-coding upstream 314996 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 335700 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 336842 24834775 ~ 24897111 (+)
XLOC_009937 dre-mir-30d non-coding downstream 106323 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 106631 25341724 ~ 25341811 (+)
XLOC_009942 NA non-coding downstream 309333 25544426 ~ 25550654 (+)
XLOC_009943 NA non-coding downstream 317229 25552322 ~ 25579827 (+)
XLOC_009948 NA non-coding downstream 595611 25830704 ~ 25831076 (+)

Expression


Co-expression Network