RNA id: TCONS_00021717



Basic Information


Item Value
RNA id TCONS_00021717
length 785
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_009931
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25233953 ~ 25235093 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGAAATTACTCAAAGCGATATACTCCACTGAAGTGACAGCCTCTTCAGAGGCTCTCCCTGGAGGTACTTCAGCTTGTGATTTCCAGTCCGGGGCAGGAGGGTCTGAAAGCCACTGCTGTGTTTATAGTCCTGCGTTGTGGATTGGCAAACAGCAAGCCCCTGGCTGTCAGTCCATCAGCCCACTGCAGGGGCGTCTCATGCCCAGAAGCGTGTTTCAGCTCTTAATTACCTAACAGAACAGCTGGCCCACAAGTCTGCCATGTATTTGCTCACCTCAGCACGAGGACGTCTGCCTGTCGCCGTAAGGCATATCACCAGTTAAACCAGCTATAAACTGAGTGTCCATCTCCCAGCACCTCAGTAAAAAAATCCACAGCCTCCTGACAGTATCTTTAGACCAGACACATTTGGTTCTCTAATATTTTAGACTTGTATTATGTTGGATTTCTAGGTAGGTAGGAACACTATAGGTATTAAATCTTGTAAAACAGTATTGGTTTTGCTGTGTGAAAGCACACCAAAACAAGATATTTATAATTCACTGCATTGTACCAAAACACATAATTATTGAAATTGTCCATCCATCAGGTTTTAATAACCTGATGTTTTTAAGAGTTTGGGTCTATTGAGCTGCCATTAGCTGTGGACTTGCGAGTCAAATAGACTTATGAACATTGTAACCCTTTGACTGCCTACTCTAACAAATtgttgaccatgttttgactgttttaaataatgactgttaaagtcaatTAAAGAATGACCGTTTTAGATAATGGCTTAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021936 lncRNA upstream 19975 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021935 lncRNA upstream 154923 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021934 lncRNA upstream 336842 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 336842 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 391641 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021940 lncRNA downstream 309333 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00021941 lncRNA downstream 317229 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021942 lncRNA downstream 579176 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 595611 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 723803 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00019798 mRNA upstream 33196 25196572 ~ 25200757 (+) True XLOC_009928
TCONS_00019797 mRNA upstream 46144 25184207 ~ 25187809 (+) True XLOC_009927
TCONS_00019796 mRNA upstream 52411 25171832 ~ 25181542 (+) True XLOC_009926
TCONS_00019795 mRNA upstream 64108 25163443 ~ 25169845 (+) True XLOC_009925
TCONS_00019794 mRNA upstream 70740 25137483 ~ 25163213 (+) True XLOC_009924
TCONS_00019799 mRNA downstream 10764 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019800 mRNA downstream 24220 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019802 mRNA downstream 50905 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019803 mRNA downstream 61296 25296389 ~ 25315136 (+) True XLOC_009935
TCONS_00019804 mRNA downstream 81880 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019788 other upstream 137391 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 314996 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 335700 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 352735 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 716861 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019801 other downstream 30706 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 106323 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 106631 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1176553 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1221117 26456210 ~ 26457614 (+) False XLOC_009958

Expression Profile


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