XLOC_009947 (irgq1)


Basic Information

Item Value
gene id XLOC_009947
gene name irgq1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25806400 ~ 25828758 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019816
CCACTGGCATATGGAGATGGAATTCGTGTTTAGAGCAGTTGACACTTCCGAAAACAAATGATCCAGAAAGCCAGTTGGCTTAGAAATTTAGACGTTGATGGTTTAGCAAATGCATGTTTCATATGTGCGCTCTTATCTATACTTTAGCTTTAACAGGGATTTCGTGTAAACAATGAAGCACAGCGGCAGCGTGATGGATAATGGATTATGCATGCCAGCAAAAGTCCAAGAAGATCATTTAGGCACAATCAGAGATGTATTTGCTGGTGAAAGCCCCGAGACAATACCCCATCGGCTTATTTCTCTTTTGGAGGTGTTTGACCGTTTTAAGATAGATATTGCTGTGACTGGAGACTCTGGTGCAGGAAAGTCTTCTTTAATCAATGCGATTCTTGGACTGAAACCTGATGACAAAGGAGCTGCTCAAACTGGAGCTATAGAAACCACAAAACAAGCAACTATGTATCAGCAATCAAATCTGCCCCACATCAGGTTGTGGGATCTTCCAGGAATGGGAACCCCTTCCTTTGCGTCCAAGAGTTATGTAAAGATGATGAACTTTGACCTTTACGACATGTTTATGGTCGTGATCTCAGAGAGGGTTCGAGAAAACAACATGCTCTTGGTTGATGAAATTGATAAACGTAAGaagccattttattttattagaaccAAAATCGATAACGATGTGAAGTCCCAGCGAAGGAAAAGCAAATTTTCTGAAACACAAGCGTTGGAACAAATGAGACAAGACTGTGAGAAATATCTGAAGGAGAAGAAACTGGACCCTCATATATTTTTAGTTTCAACCCATGACACACATAATTATGAGTTTCAGAAGTTCATCAGCACCTTTAAAGATGAGGTTTTCAAAATTAGAGCTGAAGAATTTTCAGGTTTTCTGGACAAGATGCTTCATGGTGGATGGCTAAAAGCAAGATATGCTACACAGCACGTCCAGCAGACTGAGAAACTTGAAACGGAAGACATCACAAAATTGCAGAATATGTACAAGAGCACAGGCTTTGGAGCTGCAAAAGTCAGTGCTGTGCTGGAGGCTTTGAGTCACTTTCAGCTTGATGTTGCAGTTTTGGGTGAGACGGGATCTGGAGTGTCCACTTTGGTAAATGCATTAGTTGGTCTGGAGAATGAAGAGAGCAGTGGAGCAGGAGCATCCAtcagcaacccagcactgagtcCTGTATATCCAGATGTCCGGTTTTGGGATATTTCTGGCATAGAGGCTGTCATGGATTACTCAGTGTTTGAGATGAAACAAGCCATGAAATGTTACGACTTTTATATCATCATTGTTTCAGACTGGGAGAAAGTACGACATGTAAAACTCGCCAAGGAAGTTGAAAAATTAAGGAAGCATTACCTCTTGGTCCAGACTAAAGTCGACTCTTGTTTACAGACTCAGGGAGATTTATGCTGTGAAGAGACTGAGATACTGGATGGTCTTCGGGCACAATTTACACAAGAGCTTCAGAGGGAAAAACTGTCAGAACAGCAGATGTTTCTCATCAACAGCCAGGACAGAAGTGCATTTGATTTTGTAAGTTTGGAGAGTGCACTGTCCAGTGACCTCAACACTATCAGGACAAGTGCTTTTGCATATTATATCGCAAGAACAGTAAaggaaaatttgtaaaaaatat
>TCONS_00019817
atgtttttttctaGATTATGCATGCCAGCAAAAGTCCAAGAAGATCATTTAGGCACAATCAGAGATGTATTTGCTGGTGAAAGCCCCGAGACAATACCCCATCGGCTTATTTCTCTTTTGGAGGTGTTTGACCGTTTTAAGATAGATATTGCTGTGACTGGAGACTCTGGTGCAGGAAAGTCTTCTTTAATCAATGCGATTCTTGGACTGAAACCTGATGACAAAGGAGCTGCTCAAACTGGAGCTATAGAAACCACAAAACAAGCAACTATGTATCAGCAATCAAATCTGCCCCACATCAGGTTGTGGGATCTTCCAGGAATGGGAACCCCTTCCTTTGCGTCCAAGAGTTATGTAAAGATGATGAACTTTGACCTTTACGACATGTTTATGGTCGTGATCTCAGAGAGGGTTCGAGAAAACAACATGCTCTTGGTTGATGAAATTGATAAACGTAAGaagccattttattttattagaaccAAAATCGATAACGATGTGAAGTCCCAGCGAAGGAAAAGCAAATTTTCTGAAACACAAGCGTTGGAACAAATGAGACAAGACTGTGAGAAATATCTGAAGGAGAAGAAACTGGACCCTCATATATTTTTAGTTTCAACCCATGACACACATAATTATGAGTTTCAGAAGTTCATCAGCACCTTTAAAGATGAGGTTTTCAAAATTAGAGCTGAAGAATTTTCAGGTTTTCTGGACAAGATGCTTCATGGTGGATGGCTAAAAGCAAGATATGCTACACAGCACGTCCAGCAGACTGAGAAACTTGAAACGGAAGACATCACAAAATTGCAGAATATGTACAAGAGCACAGGCTTTGGAGCTGCAAAAGTCAGTGCTGTGCTGGAGGCTTTGAGTCACTTTCAGCTTGATGTTGCAGTTTTGGGTGAGACGGGATCTGGAGTGTCCACTTTGGTAAATGCATTAGTTGGTCTGGAGAATGAAGAGAGCAGTGGAGCAGGAGCATCCAtcagcaacccagcactgagtcCTGTATATCCAGATGTCCGGTTTTGGGATATTTCTGGCATAGAGGCTGTCATGGATTACTCAGTGTTTGAGATGAAACAAGCCATGAAATGTTACGACTTTTATATCATCATTGTTTCAGACTGGGAGAAAGTACGACATGTAAAACTCGCCAAGGAAGTTGAAAAATTAAGGAAGCATTACCTCTTGGTCCAGACTAAAGTCGACTCTTGTTTACAGACTCAGGGAGATTTATGCTGTGAAGAGACTGAGATACTGGATGGTCTTCGGGCACAATTTACACAAGAGCTTCAGAGGGAAAAACTGTCAGAACAGCAGATGTTTCTCATCAACAGCCAGGACAGAAGTGCATTTGATTTTGTAAGTTTGGAGAGTGCACTGTCCAGTGACCTCAACACTATCAGGACAAGTGCTTTTGCATATTATATCGCAAGAACAGTAAaggaaaatttgtaaaaaatatcacagaaatatgTAAGATAGTTAAACATTAAGAATGAATGTTTTTGAATGAGGAACTGTATCTTACACTCACCAAGGCTacactagttaaaaaaaaattatattaataatatagtaaaatgttatttaaatttaaaataatgttttctttttaaatgtatttagaaaAATGGTCTTTGTTCTTGATAATTGTTCATATTATCatggttgaaaatatttttttctgcttcatATTAATGTGTAAACAAGATTATTTGATGAgcagcaagtaaaaaaaattatttataatagaattatttttaacattacaaATCTCTACCATCTCTTTTCAGTAATTTCATCttttttgattaataaaataatccaAAAGAACAAATCTAGAAAGATATAAAAACATAGaaatactcatttattcattcgttttcccttcgacttagtccctttattaatcaggggtggccacatggtaatgaacagccaacttactcagcatatgttttacacagcagatgcccttccagctgcaacccatcactgtgaaacacccatacactaattCACCTataaccacatgtttttggactgtgggggaaaccggagcactcggaggaaacccatgccaaaatggggagaacatgcaaactccacaaagaagcatttctgacccagccagggctcgaactagcgacttcttgctgtgaggcaattgtgctacccactgtgccaccttgacatcacattaaatatgttaaaacagatgtttttttttttttttatgagccaTATAACATTTTCACAAGAATATGACCCAGAACAAACAACAGTGACAGTTCTGGTTAATTTACCGTCAACTGTTTTTGTTTAGGGTTGTTTTTGGTACTGATGTATACAACTGGTGTGTGATGTTTTAGGGACGTTCAATATATTAATGGAATTTTTCTGTACGTTATAAAGTAGTttaataatttagtatttttctgTCTGTGATGTGTGTTAAagtaaacgcaaaaaaaaaggcACATTGGGATTGATGGTCTCTGTCAAAATTCTTGCAAAAGaatagaaaatattcatatggGAAACTGAAAATTATTGGAAAAACTGGTCTGtagtatagaaaataaaaatgtaagtgtgccatttattttttgtatgatgATTGTTGTACCACTTAAAGCAGTAACTTAAAACTGTTTTttgtttaagaaaatgtttatggaaaaaaaaaaaaacagactataTGTGAGTTATACTGTAACATAAAATCTGAATACATTTAGTGAAACTATTCAAGATGTCTGTGTGCATTTTTCAGGTCAAATTCTTGTGTTGTTTTGGATTACAAGATAAACACTTTGTGACTATGTCAGGCGTCAGTGATAAGAACTGGAAAAATCCAGTCACaacctaaaacattttaaaaggcttcataatttaaaatgtatcataaacctttttttttcttaaaaaaaacccAATATATAGTTACACATCGATCTGCCTAAAACAAATTTAATGGCTCTAAAAATAAGGTTTAACAATAATGcctacatatagttgaagtcagaattattagccccctgtttatttcttttccctaatttctatttaacggagagaagattgtttttcaacacatttctaaacataatggtttaataactgattcattttatctttgccatgatgacataatgctaataattttgtctttgaaatagtgtttaaaaaaaatgaaaatctgcttctattctagccgaaataaaacaaataagactttctccagaagagaaagatgtttgctctgttaaacatcatttaggtaatattttgaaaaaaaaaatctaaatcaaagggggggctaatgattctgacttcaactgtatatgaattaTAGTACCACCATGGAACAAAAAggagtttatttacattttattaaaacattttttaattcagATTCATACTTATGGGAAACCACATACCACATGCATTCTGGATAATAGAACAAAAAAATCTGTGTCTGGATATTTAGAACACCCTGACAATCAACTCCTGTCAATAAgttaatttttgttattgaaGTTTatgaaattttttaaatatttacaaagtaaaaatattgCTGAACTAATATACAAAACGTTATTACAAAATtcccaaaaataataaaaaatattttagaattttgTTACGTTTGAGTCATTTTACATTATTTgtgataaaaatatgtttaattgacAACTCATTAAAGtaattaaagtttattattaagaaGTAGAAAAGTGTAAAGGGTATTTAAGTgaacaatgtttaaaaataaataaattaggtatTGAACTTGATTGatggactgaaaaaaaaaatcaaactgaaAACTGTCTACTAATTgtaatatattgtaacatatttcACTACAttaacatttgcttttttttattatcaaagcAGGATTTTGTTTGCTAAGCTAAAGAATGACACAGTATTTACAATATCATTTGATTTAATAAGCAAAAGAGGCAGGAATTATGTTTATGCTTTATAGGAAATAAATCAATGATCTGAATGTGAACACAAAATACATTCTTAGCTAAATTATTTCAACACATGTACCAGGGACTTTCACATCATCCAGCCCAGCTTCTTTTTGTATTTCTTTAGCAGTTTTTGCCAGATCATTTAATACTTCTGTCAGGAGGTACTTCGTTGTAGCAAAGGATATTCCTGCAGCAGCAGCACTGCCTAGACCTGGAAGGAGACTCAAGCAATATTCAACTGTACCAATTGCAGCAGAGACTTGTACTTTGGTCAGAACTTTTTCTCGGATGGCAATGACAAACTTTGATTTGGCCATATCTTTCAGGTGGGGCTTGTTCACTTTTTCTGAAAGCCTTGTCAGGGATTTCTAATCTAAGCCAAATGCAAAGTAGCACCTTGTGAGAAATAGAACCACAATGGCCAAATCACATGCTGCTGATAGACCAGGCAGAGGGACCACAGCTATACCAGCAGAGGCAAAAGATACAGCCCAGGTCATGCATTCAAACATCTTTTCTTCTCAAGACATGCACTAGACCACACCGGTCAGGCTTGTAGAAGAGCAGATTGTTTGAGTTTTGGAAGCTCTTCAAAGATTGTGTTTAGAAGGTTTTCAAATTCATATTTGTTAGAATCTGTAGATGAAATCAAGAAAATGTTGGGCTTTCCCAGTGTTCTCAGATTTTTCTGACAGTCTTCTTTTATTGTGTCAAGGACCCTTTGttcatcaaatgttttttttttttttcctgatgaaATGTCGTTATCAATCTTGAAGTGAACAATGTAAAgtttttcttctgctttttcATTTCTTTGGCTAACCTGATGTCATTCTCTGTGAATCTCGCTGAGGTGAGAATCACAGCGATGTTAAGTAAGACATTCATAAACTGGTCAAATGCTTCTTTGGCTTTTGCTGTGGCCTTTTCCAAGGTTGATTCGCCTGAGGCATTTACTGCCTCAACAACAGCAGGGTCTTGAACTTCCATGTTTTGAACAGCAAACTTAGCCAATGATTCAAGAACAGATCTAAGTTAGAGACATAATTGTCAAAGTCAGGGGTGACAAactaagtttctggagggccgcagccctgctcagttaagttccaaccctgcttcaacacaattAAGCTGCTATCACACTGGACTATTTTCACcatcttccattcatacgcacgcgaatgcgtcagaccgg
>TCONS_00021942
ACTTTCACATCATCCAGCCCAGCTTCTTTTTGTATTTCTTTAGCAGTTTTTGCCAGATCATTTAATACTTCTGTCAGGAGGTACTTCGTTGTAGCAAAGGATATTCCTGCAGCAGCAGCACTGCCTAGACCTGGAAGGAGACTCAAGCAATATTCAACTGTACCAATTGCAGCAGAGACTTGTACTTTGGTCAGAACTTTTTCTCGGATGGCAATGACAAACTTTGATTTGGCCATATCTTTCAGGTGGGGCTTGTTCACTTTTTCTGAAAGCCTTGTCAGGGATTTCTAATCTAAGCCAAATGCAAAGTAGCACCTTGTGAGAAATAGAACCACAATGGCCAAATCACATGCTGCTGATAGACCAGGCAGAGGGACCACAGCTATACCAGCAGATGCAAGAGATGCAGCCCAGATCACACCTTCAAACATCTTGATCTTCATCTCCAAAGATGCAGCAGAGCACACCGGCCAGGCTTGTAGGAGAGCATTTCTCTTATGGACTGGAAGCTCTTCTGCTAGTGTGTTTTGAAGTTCTTCAAAATCATACTTCTCCAAGTCAAAAGATGAAATCAGGAACACTTTGGGGTCTCCCAGTTGCTTTAAGTTTTTCAGACAGTCCTCCCTTATTGTGCAAAGGACCCTCTGttcatcaaatgttttttttctttgctctgctGAAATATCGTTGTCAATCTTTGAGCGAACAAAGTAAAAGTTTTTCTTCTGCTTTCTTATTTCTTTAGCCAACATGACATCATTCTGCATGAACCTCTCGGAGTTCAAAATAATGAAGAAgtcataattttttaatttgaCATCTTTAAGGTATTTATCTGCTTTGAAGTTTGGACTTCCTATTCCAGGCAGGTCCCAGATCTTCACATTTGGCATTGCAGGATGCTCATACATGTTGGGCTCCATTGTAGTTTCTGTGACCCCAGTAGGTGCTGCTCCTTCATCATCATCCTTTAGACCTCTTAGTGCATTTATAAAGGAGGATTTCCCTGATCCTGTCTTTCCAGTCACAGCGATGTTAAGCGAGACATTCATAAACTGGTCAAAACTTTCTTTGGCTTTTGCTGTGGCCTTTTCCAAGGTTGATTCACCAGAGGCCTGCACTGCCTCAGCAATAGCAGGGTCCTGAGTTTCCATGTTTTTAACTGTAAAAGTTATAGAAGTATTCAGAAGTATATGTTCTTAAAAATCCCTAAAACTCAAAGAAACTTGATTGTAATTGCAGTTAATTCTATTAGTGTAATTAGTTTGAATAAGTTTGAGCACCACCCTCACATTCAGCCTTGAAGATTATCTcttaaaggtccagtgaaatcaaaataatttatCAGTCAGTTTGTCTAAAGAATATCTattagtgtgctccaaaacacttACAAAATTTGCGTTTTgaaaatataaacatctaaagcttCAGGCTGTCACTTCCCCTAAATGATTCAAGGTTTTTTTAAACAGTTCATGTTTATAACACCAtcagtaataaataattaaagaagtACAATTACAATATAAACAGATAGTATGACAGACATCATTGATTACAGACATGTAATCATGTAGCAACTAGAAATCCGCAGTGGTTTATACTGACCTTTTGTGTGGAaaacttttcagtttttatttcacagtgTGCACCTGTGTCAGGCAAAAAAATACAGTTCATTCATGGATTACTCCACATGAAATTctcatatatggccatatataAACATtcagttctatctatctatctatctatctatctatctatctatc

Function

symbol description
irgq1 Predicted to enable GTP binding activity. Predicted to be located in membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051212-3 Predicted to enable GTP binding activity. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDARG00000086847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019816 False 1661 mRNA 0.41 3 25806400 25811654
TCONS_00019817 False 5205 mRNA 0.35 2 25809235 25815388
TCONS_00021942 True 1775 lncRNA 0.38 2 25814269 25828758

Neighbor

gene id symbol gene type direction distance location
XLOC_009946 cblc coding upstream 5581 25761101 ~ 25800819 (+)
XLOC_009945 nsmce2 coding upstream 133809 25664078 ~ 25672591 (+)
XLOC_009944 zhx2a coding upstream 163174 25608778 ~ 25643226 (+)
XLOC_009943 NA coding upstream 226573 25552322 ~ 25579827 (+)
XLOC_009942 NA coding upstream 255746 25544426 ~ 25550654 (+)
XLOC_009948 NA coding downstream 1946 25830704 ~ 25831076 (+)
XLOC_009949 NA coding downstream 130138 25958896 ~ 25960158 (+)
XLOC_009950 si:ch73-103b2.1 coding downstream 161185 25989943 ~ 25991643 (+)
XLOC_009951 prss59.1 coding downstream 183811 26012569 ~ 26013851 (+)
XLOC_009952 prss59.2 coding downstream 188602 26017360 ~ 26018694 (+)
XLOC_009938 dre-mir-30b non-coding upstream 464589 25341724 ~ 25341811 (+)
XLOC_009937 dre-mir-30d non-coding upstream 464857 25341416 ~ 25341543 (+)
XLOC_009931 NA non-coding upstream 571307 25233953 ~ 25235093 (+)
XLOC_009954 NA non-coding downstream 245953 26074711 ~ 26080716 (+)
XLOC_009956 BX571761.1 non-coding downstream 582888 26411646 ~ 26411778 (+)
XLOC_009959 CR391910.1 non-coding downstream 665998 26494756 ~ 26495893 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06074183_06075352 NA coding CI01000027 null 6074105 ~ 6076672 (-)