RNA id: TCONS_00019816


Basic Information

Item Value
RNA id TCONS_00019816
length 1661
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_009947
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25806400 ~ 25828758 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACTGGCATATGGAGATGGAATTCGTGTTTAGAGCAGTTGACACTTCCGAAAACAAATGATCCAGAAAGCCAGTTGGCTTAGAAATTTAGACGTTGATGGTTTAGCAAATGCATGTTTCATATGTGCGCTCTTATCTATACTTTAGCTTTAACAGGGATTTCGTGTAAACAATGAAGCACAGCGGCAGCGTGATGGATAATGGATTATGCATGCCAGCAAAAGTCCAAGAAGATCATTTAGGCACAATCAGAGATGTATTTGCTGGTGAAAGCCCCGAGACAATACCCCATCGGCTTATTTCTCTTTTGGAGGTGTTTGACCGTTTTAAGATAGATATTGCTGTGACTGGAGACTCTGGTGCAGGAAAGTCTTCTTTAATCAATGCGATTCTTGGACTGAAACCTGATGACAAAGGAGCTGCTCAAACTGGAGCTATAGAAACCACAAAACAAGCAACTATGTATCAGCAATCAAATCTGCCCCACATCAGGTTGTGGGATCTTCCAGGAATGGGAACCCCTTCCTTTGCGTCCAAGAGTTATGTAAAGATGATGAACTTTGACCTTTACGACATGTTTATGGTCGTGATCTCAGAGAGGGTTCGAGAAAACAACATGCTCTTGGTTGATGAAATTGATAAACGTAAGaagccattttattttattagaaccAAAATCGATAACGATGTGAAGTCCCAGCGAAGGAAAAGCAAATTTTCTGAAACACAAGCGTTGGAACAAATGAGACAAGACTGTGAGAAATATCTGAAGGAGAAGAAACTGGACCCTCATATATTTTTAGTTTCAACCCATGACACACATAATTATGAGTTTCAGAAGTTCATCAGCACCTTTAAAGATGAGGTTTTCAAAATTAGAGCTGAAGAATTTTCAGGTTTTCTGGACAAGATGCTTCATGGTGGATGGCTAAAAGCAAGATATGCTACACAGCACGTCCAGCAGACTGAGAAACTTGAAACGGAAGACATCACAAAATTGCAGAATATGTACAAGAGCACAGGCTTTGGAGCTGCAAAAGTCAGTGCTGTGCTGGAGGCTTTGAGTCACTTTCAGCTTGATGTTGCAGTTTTGGGTGAGACGGGATCTGGAGTGTCCACTTTGGTAAATGCATTAGTTGGTCTGGAGAATGAAGAGAGCAGTGGAGCAGGAGCATCCAtcagcaacccagcactgagtcCTGTATATCCAGATGTCCGGTTTTGGGATATTTCTGGCATAGAGGCTGTCATGGATTACTCAGTGTTTGAGATGAAACAAGCCATGAAATGTTACGACTTTTATATCATCATTGTTTCAGACTGGGAGAAAGTACGACATGTAAAACTCGCCAAGGAAGTTGAAAAATTAAGGAAGCATTACCTCTTGGTCCAGACTAAAGTCGACTCTTGTTTACAGACTCAGGGAGATTTATGCTGTGAAGAGACTGAGATACTGGATGGTCTTCGGGCACAATTTACACAAGAGCTTCAGAGGGAAAAACTGTCAGAACAGCAGATGTTTCTCATCAACAGCCAGGACAGAAGTGCATTTGATTTTGTAAGTTTGGAGAGTGCACTGTCCAGTGACCTCAACACTATCAGGACAAGTGCTTTTGCATATTATATCGCAAGAACAGTAAaggaaaatttgtaaaaaatat

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051212-3 Predicted to enable GTP binding activity. Predicted to be located in membrane.

Ensembl:

ensembl_id ENSDART00000154652

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021941 lncRNA upstream 226573 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021940 lncRNA upstream 255746 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00021938 lncRNA upstream 564090 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021942 lncRNA downstream 2615 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 19050 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 147242 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00021944 lncRNA downstream 263057 26074711 ~ 26080716 (+) True XLOC_009954
TCONS_00019826 lncRNA downstream 629696 26441350 ~ 26443895 (+) False XLOC_009957
TCONS_00019815 mRNA upstream 5581 25761101 ~ 25800819 (+) True XLOC_009946
TCONS_00019813 mRNA upstream 133809 25664078 ~ 25672591 (+) False XLOC_009945
TCONS_00019814 mRNA upstream 133915 25664387 ~ 25672485 (+) True XLOC_009945
TCONS_00019812 mRNA upstream 163174 25608778 ~ 25643226 (+) True XLOC_009944
TCONS_00019811 mRNA upstream 257662 25535993 ~ 25548738 (+) True XLOC_009941
TCONS_00019818 mRNA downstream 178289 25989943 ~ 25991643 (+) True XLOC_009950
TCONS_00019819 mRNA downstream 200915 26012569 ~ 26013851 (+) True XLOC_009951
TCONS_00019820 mRNA downstream 205706 26017360 ~ 26018694 (+) True XLOC_009952
TCONS_00019821 mRNA downstream 209232 26020886 ~ 26022068 (+) True XLOC_009953
TCONS_00019822 mRNA downstream 301803 26113457 ~ 26154566 (+) True XLOC_009955
TCONS_00019806 other upstream 464589 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 464857 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 534563 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019788 other upstream 709838 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 887443 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019823 other downstream 599992 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 644556 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019834 other downstream 829023 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 1395015 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 1412882 27224536 ~ 27225245 (+) False XLOC_009974

Expression Profile

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