XLOC_009949


Basic Information

Item Value
gene id XLOC_009949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25958896 ~ 25960158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021943
CTTTGCTAGTCAGTGCCGACAGCTCCTTATTGACCAAATGCATAGTAACACTTGATGAAGAAACCCAGCAAAATGGCAGCATCACAGGCCATGGAAAGACCAGGCACTGGAACCACAGCCACAGAGCCAGAAGCAACAGCTGCCGACCAGGTTTGCTTCATAAATATTTCAATTTTCTCTTCCAAAATCTTTGAGGAGTATATTGGCAAGGACAAAATCAAAGCATCTCTCTTGTGATCAGGCAGCTGCTTCTCCAATGTGTCGACAAATGTCTGAAAATCATATTTGTGCAGTTCAAAGGAACATATTAGGAAAACATGTGGGTCATCCATGTCCTTCAGATTCCTGTGACAGTCCTCACGAATGTGTGAGAGCACTTTCTGCTCATCAAAGTCTTTCCTATGAGATTCAGCATGAATGTCATTGTCGATCTTTGAGCGGAGGAAATAAAACAGCTTCTTCCTCTCTTTAATCGCATTAGCCAGCATGATGTCGTTTTCCTTGAATCTTTCTGAGGAAATGATGATAAAGAAGTCGAAGGTCTCAAGTTTCACCTCTTTTAGGTATTTCTTGGCTTTAAATTTAGGACTTCCAGTCCCTGGCAGATCCCACAATTCAACATTTGGCATTGTAGGATGTTTGTACATCATTGGCACCAACGTCGTCTCAGTCACACCTGTAGGAGCTGCATTTTCATCATCAGATGTAAGACCTCTTACTGCATTGATGAAGCTGGATTTTCCTGCTCCAGTTGAACCTGTTACAGCAACATGAAGCGTGACGTTGCCCAGTTGCTTGTTTTGCTCAATCACACATTCCATTTCATTAATGTATTCAGCAGAACTATTGAGATGAACATCAGGCATTTCATATATATGCTCAACTTGTACAGTGCTTGCTGATTTTAAACTCACATTTTCTTTAGCAGTACTGTGAGAATGTGTATCTTGTGGTTTTCTGGAATTGGACAGTTCCTGCTTCTGCATCTTCATCAATTCACCATAATTCTCTTTAAGCTTTATCGGTTCACTAGAGTTAGATTGAGTTGGTTCTTCTGTCAAAACATCTTTATCCATTATAGCATCATACAGGTGTTGTAAATGACCTTTTCCATTACCTTCAGGCTTTGTTTTAAGGATCTCTGTTGCTTTTTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021943 True 1156 lncRNA 0.41 2 25958896 25960158

Neighbor

gene id symbol gene type direction distance location
XLOC_009948 NA coding upstream 127820 25830704 ~ 25831076 (+)
XLOC_009947 irgq1 coding upstream 130138 25806400 ~ 25828758 (+)
XLOC_009946 cblc coding upstream 158077 25761101 ~ 25800819 (+)
XLOC_009945 nsmce2 coding upstream 286305 25664078 ~ 25672591 (+)
XLOC_009944 zhx2a coding upstream 315670 25608778 ~ 25643226 (+)
XLOC_009950 si:ch73-103b2.1 coding downstream 29785 25989943 ~ 25991643 (+)
XLOC_009951 prss59.1 coding downstream 52411 26012569 ~ 26013851 (+)
XLOC_009952 prss59.2 coding downstream 57202 26017360 ~ 26018694 (+)
XLOC_009953 mrpl17 coding downstream 60728 26020886 ~ 26022068 (+)
XLOC_009954 NA coding downstream 114553 26074711 ~ 26080716 (+)
XLOC_009943 NA non-coding upstream 379069 25552322 ~ 25579827 (+)
XLOC_009942 NA non-coding upstream 408242 25544426 ~ 25550654 (+)
XLOC_009938 dre-mir-30b non-coding upstream 617085 25341724 ~ 25341811 (+)
XLOC_009937 dre-mir-30d non-coding upstream 617353 25341416 ~ 25341543 (+)
XLOC_009956 BX571761.1 non-coding downstream 451488 26411646 ~ 26411778 (+)
XLOC_009959 CR391910.1 non-coding downstream 534598 26494756 ~ 26495893 (+)
XLOC_009960 NA non-coding downstream 549227 26509385 ~ 26511109 (+)
XLOC_009961 NA non-coding downstream 571619 26531777 ~ 26533757 (+)

Expression


Co-expression Network