XLOC_009959 (CR391910.1)


Basic Information

Item Value
gene id XLOC_009959
gene name CR391910.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26494756 ~ 26495893 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019830
TTCCGCATAACGTGCTTTACAGTGAAATCTTACAGCGGCGAAACCAAAACACGTTCGGAGCATGGCAAAGAAGGGAGATTTACACATAAATTGATGAGGATCCTGTGCCAGTGGATGCCTAGCATCTGTAACATCATTATTGTTCAGTTCCACAACCCACGGCAGATGATTAATGCACCCGATCAGGCTGACAGTCTCCGTGAGGAGGTGGAGTGACTGAAAGGAGACTGCTTCCATGCTGCTTTTGGTGTTATACAGCTCTAAAGGTTCACAACTTGCATCCTACAACATCCAGAGTAACATGTCCAGAGTAAGCGCAACTGTGAGGGAGACACCGTCCATGGCTGAGGGTCCACACTGAGCAATTCATTCGCAGCATGAAGCAACACAAGCTGGACAGTCTTCATCTCTTTCTATTACAGCAAGCAACCAAACCAGAtttatacaatggcttgccttTTGCACATTAGTAAAAGCTTGAGCTAAATATTAAAGTTCACACACTGTACATAATTTATATGTTGTTGCCTGCACTGCAGGAATATAAAGTTGtcaatataataaacattaattttcagCATATTCATTTAAACATATATTACAGAACAATTTGAGTGAACAATTGCTCTAACTATtgtaaatatgaataattttagAT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019830 True 658 lncRNA 0.40 2 26494756 26495893

Neighbor

gene id symbol gene type direction distance location
XLOC_009958 epb41b coding upstream 6587 26449615 ~ 26488169 (+)
XLOC_009957 trim35-28 coding upstream 48435 26439518 ~ 26446321 (+)
XLOC_009956 BX571761.1 coding upstream 82978 26411646 ~ 26411778 (+)
XLOC_009955 BX571738.1 coding upstream 340190 26113457 ~ 26154566 (+)
XLOC_009954 NA coding upstream 414040 26074711 ~ 26080716 (+)
XLOC_009960 NA coding downstream 13492 26509385 ~ 26511109 (+)
XLOC_009961 NA coding downstream 35884 26531777 ~ 26533757 (+)
XLOC_009962 ptpn3 coding downstream 51259 26547152 ~ 26600624 (+)
XLOC_009963 epb41l4b coding downstream 105471 26601364 ~ 26635305 (+)
XLOC_009964 BX537166.1 coding downstream 144784 26640677 ~ 26643826 (+)
XLOC_009949 NA non-coding upstream 534598 25958896 ~ 25960158 (+)
XLOC_009948 NA non-coding upstream 663680 25830704 ~ 25831076 (+)
XLOC_009943 NA non-coding upstream 914929 25552322 ~ 25579827 (+)
XLOC_009973 LO017763.1 non-coding downstream 710776 27206669 ~ 27206797 (+)
XLOC_009977 CR848817.1 non-coding downstream 919804 27415697 ~ 27415812 (+)

Expression


Co-expression Network