XLOC_009963 (epb41l4b)


Basic Information

Item Value
gene id XLOC_009963
gene name epb41l4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26601364 ~ 26635305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019832
ATGATGGGCTTTCTGCGCAGGACGTTTAGCCGTCGGTCAAAAAGAAACGCTCGGCCGCCGAGCGAGGTAGACGGGACCGGTAACGTTAGAGGCGGAAACGCAGTGCTCCAGGCGCACCAGCAGCAGGTGATTCACGCGCCGACCGTAGTGACCGGGGGAGCCGTAGTGCACATCCCCGCAGCGGGCAACAGCAAAGACGCCATCACATGCAGAGTCCTGCTGCTGGACGGATCGGATGTCAATGTGGAGTTACCGAAACACGCCAAGGGGCAGGATCTGTTTGATCAGATTATGTATCACTTGGATCTGGTGGAAGCTGATTACTTTGGGCTGCAGTTCATGGACCCGGAGCAGGTTGCGGTGAGTGATGGACCTCCATACAGATTGTTTTTCAGGGTTAAATTCTATTCCTCGGAGCCCAATAACCTTCACGAAGAGTTCACCAGCAGGTTAAAATGTCCGTATGATGTTTCCGTAGAGCTCGGGGCGTATTGCTTACAGAGTGAACTTGGGGATTGTGATCCACTAGAACACTCGATTTTGTTAGTATCAGAGTTTCGCTTTTCACCCAAACAGACAGAGATTATGGAGGCAGACATCTACCGCAAATGGGTTGAGTGCAGAGGAATGATTCCTTCTCAAGCTGAGCTGAATTTCCTGAATAAGTGCAAGTGGCTGGAAATGTACGGAGTGGACATGCATTTTGTGAAGGGACGGGATGGAGGAGAATATGCTCTGGGGCTCACTCCAACTGGAATCCTTGTTTTTGAGGGATCCAGCAAAATTGGTCTCTTTTTCTGGCCTAAAATAACCCGTCTTGACTTCAAGAGGAACAGGCTGACCTTAGTAGTCGTGGAGGATGATGAGAAGgGTCGAGAGCAGGAGCACACGTTTGTGTTTCAGCTGTCGAGTTCTCATGAGTGTAAGCATTTATGGAAGTGTGCAGTCGAGAGCCATGCCTTCTTCCGGCTCCGGCAGCCAACCCACAACAAAACCAGCCGCAGTGACTTCACACGCCTAGGCTCACGCTTCAGATTCAGTGGAAGAACTGAATATCAGGCCACACATAGTGGTAAAGTCAGAAGAGCAAGCACTTTTGAGAGAAGGCCAAGTAAAAGATATCCATCACGGGCTCAGTCTATGGTCAAGGGTAGGTCTGTGTGccatgtgcaTGCACAGACCAGCCCTGAGCCAAGCTTAAAACCGTATAAGCACAACATTCCAATTGCACAGGATCCTTGGCAAAGATcacaccctcctccttctctgaCCTCTCCTCTATACATCCAGCCCATGGAATTGGGACACACACCTCCACCACACAGACCCCCTGCGAGCAGTGTTGGGTTTGGTGAGAGCGATTTGGTTGCGCGCAATGTCAGGAGCGTGTCTGTCATGCACAAAGACAAACTTATGACTGCACTCTAA
>TCONS_00019833
AATGTGTGCGTTTCAGAAACACGCCAAGGGGCAGGATCTGTTTGATCAGATTATGTATCACTTGGATCTGGTGGAAGCTGATTACTTTGGGCTGCAGTTCATGGACCCGGAGCAGGTTGCGCACTGGCTGGATGCGGCCAAGCCCATAAAGAAGCAGATTAGACATGGACCTCCATACAGATTGTTTTTCAGGGTTAAATTCTATTCCTCGGAGCCCAATAACCTTCACGAAGAGTTCACCAGGTATCTCTTTGTACTGCAGCTTAGACAAGACATACTGTCCGGCAAGTTAAAATGTCCGTATGATGTTTCCGTAGAGCTCGGGGCGTATTGCTTACAGAGTGAACTTGGGGATTGTGATCCACTAGAACACTCGATTTTGTTAGTATCAGAGTTTCGCTTTTCACCCAAACAGACAGAGATTATGGAGGCAGACATCTACCGCAAATGGGTTGAGTGCAGAGGAATGATTCCTTCTCAAGCTGAGCTGAATTTCCTGAATAAGTGCAAGTGGCTGGAAATGTACGGAGTGGACATGCATTTTGTGAAGGGACGGGATGGAGGAGAATATGCTCTGGGGCTCACTCCAACTGGAATCCTTGTTTTTGAGGGATCCAGCAAAATTGGTCTCTTTTTCTGGCCTAAAATAACCCGTCTTGACTTCAAGAGGAACAGGCTGACCTTAGTAGTCGTGGAGGATGATGAGAAGgGTCGAGAGCAGGAGCACACGTTTGTGTTTCAGCTGTCGAGTTCTCATGAGTGTAAGCATTTATGGAAGTGTGCAGTCGAGAGCCATGCCTTCTTCCGGCTCCGGCAGCCAACCCACAACAAAACCAGCCGCAGTGACTTCACACGCCTAGGCTCACGCTTCAGATTCAGTGGAAGAACTGAATATCAGGCCACACATAGTGGTAAAGTCAGAAGAGCAAGCACTTTTGAGAGAAGGCCAAGTAAAAGATATCCATCACGGGCTCAGTCTATGGTCAAGGCCATGACTCCAGCAAAGCATCCCCATTTAAGTGCACAGACCAGCCCTGAGCCAAGCTTAAAACCGTATAAGCACAACATTCCAATTGCACAGGATCCTTGGCAAAGATcacaccctcctccttctctgaCCTCTCCTCTATACATCCAGCCCATGGAATTGGGACACACACCTCCACCACACAGACCCTCCTATGTGGACAGACCCCCTGCGAGCAGTGTTGGGTTTGGTGAGAGCGATTTGGTTGCGCGCAATGTCAGGAGCGTGTCTGTCATGCACAAAGACAAACTTATGACTGCACTCTAAGCATGTGAGAGGGTGTTTGGATGAGCCGCTCACCTTAGTAAAAGAGATGCTCGCATCCAGTCACAGTCGGTGTGTCATCCTTCATCATCTCACCTTCTGGAGTCTCATCTTTTGCTTGTGATCATCCATCAACTCATCCATCATGTGACATGTCTCATCCGATCAAATGCGTCCTGAAATGACAAACACATATTCAGCATATGTGGACCGTGACGTCTGACAAGTCTGCATGTTGATAGCTTTTAGAGTTTTGCATGATTTATGGTAAAATCTAGAACTAGCAAATGACCTGAACCATGTCAGAAGATGTGCTGCTGTTGTGGCTTTATATTCTAAAGCAGGATTGCTCAGGTTGGGTCCACCAAAAAGCCCGGCTGAGCAGCCTTGTTCTAGATTATagcctattttattattttaattcatatattttgTGCATATCATGTATGAATGTTTACTTTTAAGTGCAGATCATTTATATAATGCCAAGACGAGCTC

Function

symbol description
epb41l4b Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B).

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko04530 Tight junction
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-100921-92 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B).

Ensembl:

ensembl_id ENSDARG00000061398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019832 False 1428 mRNA 0.51 13 26601364 26634810
TCONS_00019833 True 1789 mRNA 0.46 15 26612401 26635305

Neighbor

gene id symbol gene type direction distance location
XLOC_009962 ptpn3 coding upstream 740 26547152 ~ 26600624 (+)
XLOC_009961 NA coding upstream 67607 26531777 ~ 26533757 (+)
XLOC_009960 NA coding upstream 90255 26509385 ~ 26511109 (+)
XLOC_009959 CR391910.1 coding upstream 105471 26494756 ~ 26495893 (+)
XLOC_009958 epb41b coding upstream 113195 26449615 ~ 26488169 (+)
XLOC_009964 BX537166.1 coding downstream 5372 26640677 ~ 26643826 (+)
XLOC_009965 virma coding downstream 45203 26680508 ~ 26717597 (+)
XLOC_009966 rad54b coding downstream 96781 26732086 ~ 26758184 (+)
XLOC_009967 fsbp coding downstream 103099 26738404 ~ 26743187 (+)
XLOC_009968 gem coding downstream 131118 26766423 ~ 26769327 (+)
XLOC_009956 BX571761.1 non-coding upstream 189586 26411646 ~ 26411778 (+)
XLOC_009954 NA non-coding upstream 520648 26074711 ~ 26080716 (+)
XLOC_009973 LO017763.1 non-coding downstream 571364 27206669 ~ 27206797 (+)
XLOC_009977 CR848817.1 non-coding downstream 780392 27415697 ~ 27415812 (+)
XLOC_009984 NA non-coding downstream 1204622 27839927 ~ 27873367 (+)
XLOC_009986 NA non-coding downstream 1414249 28049554 ~ 28050028 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06410011_06426230 EPB41L4B coding CI01000027 null 6410011 ~ 6426936 (+)