RNA id: TCONS_00019832


Basic Information

Item Value
RNA id TCONS_00019832
length 1428
RNA type mRNA
GC content 0.51
exon number 13
gene id XLOC_009963
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26601364 ~ 26635305 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGGCTTTCTGCGCAGGACGTTTAGCCGTCGGTCAAAAAGAAACGCTCGGCCGCCGAGCGAGGTAGACGGGACCGGTAACGTTAGAGGCGGAAACGCAGTGCTCCAGGCGCACCAGCAGCAGGTGATTCACGCGCCGACCGTAGTGACCGGGGGAGCCGTAGTGCACATCCCCGCAGCGGGCAACAGCAAAGACGCCATCACATGCAGAGTCCTGCTGCTGGACGGATCGGATGTCAATGTGGAGTTACCGAAACACGCCAAGGGGCAGGATCTGTTTGATCAGATTATGTATCACTTGGATCTGGTGGAAGCTGATTACTTTGGGCTGCAGTTCATGGACCCGGAGCAGGTTGCGGTGAGTGATGGACCTCCATACAGATTGTTTTTCAGGGTTAAATTCTATTCCTCGGAGCCCAATAACCTTCACGAAGAGTTCACCAGCAGGTTAAAATGTCCGTATGATGTTTCCGTAGAGCTCGGGGCGTATTGCTTACAGAGTGAACTTGGGGATTGTGATCCACTAGAACACTCGATTTTGTTAGTATCAGAGTTTCGCTTTTCACCCAAACAGACAGAGATTATGGAGGCAGACATCTACCGCAAATGGGTTGAGTGCAGAGGAATGATTCCTTCTCAAGCTGAGCTGAATTTCCTGAATAAGTGCAAGTGGCTGGAAATGTACGGAGTGGACATGCATTTTGTGAAGGGACGGGATGGAGGAGAATATGCTCTGGGGCTCACTCCAACTGGAATCCTTGTTTTTGAGGGATCCAGCAAAATTGGTCTCTTTTTCTGGCCTAAAATAACCCGTCTTGACTTCAAGAGGAACAGGCTGACCTTAGTAGTCGTGGAGGATGATGAGAAGgGTCGAGAGCAGGAGCACACGTTTGTGTTTCAGCTGTCGAGTTCTCATGAGTGTAAGCATTTATGGAAGTGTGCAGTCGAGAGCCATGCCTTCTTCCGGCTCCGGCAGCCAACCCACAACAAAACCAGCCGCAGTGACTTCACACGCCTAGGCTCACGCTTCAGATTCAGTGGAAGAACTGAATATCAGGCCACACATAGTGGTAAAGTCAGAAGAGCAAGCACTTTTGAGAGAAGGCCAAGTAAAAGATATCCATCACGGGCTCAGTCTATGGTCAAGGGTAGGTCTGTGTGccatgtgcaTGCACAGACCAGCCCTGAGCCAAGCTTAAAACCGTATAAGCACAACATTCCAATTGCACAGGATCCTTGGCAAAGATcacaccctcctccttctctgaCCTCTCCTCTATACATCCAGCCCATGGAATTGGGACACACACCTCCACCACACAGACCCCCTGCGAGCAGTGTTGGGTTTGGTGAGAGCGATTTGGTTGCGCGCAATGTCAGGAGCGTGTCTGTCATGCACAAAGACAAACTTATGACTGCACTCTAA

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko04530 Tight junction
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-100921-92 Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4B (erythrocyte membrane protein band 4.1 like 4B).

Ensembl:

ensembl_id ENSDART00000087537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021946 lncRNA upstream 67607 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00021945 lncRNA upstream 90255 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00019830 lncRNA upstream 105471 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021719 lncRNA upstream 121704 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019827 lncRNA upstream 157469 26443304 ~ 26443895 (+) True XLOC_009957
TCONS_00019846 lncRNA downstream 142663 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00019855 lncRNA downstream 589562 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 908498 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 908687 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00021949 lncRNA downstream 908772 27543582 ~ 27556789 (+) False XLOC_009979
TCONS_00019831 mRNA upstream 740 26547152 ~ 26600624 (+) True XLOC_009962
TCONS_00019828 mRNA upstream 113195 26449615 ~ 26488169 (+) False XLOC_009958
TCONS_00019824 mRNA upstream 155043 26439518 ~ 26446321 (+) False XLOC_009957
TCONS_00019825 mRNA upstream 157401 26439939 ~ 26443963 (+) False XLOC_009957
TCONS_00019822 mRNA upstream 446798 26113457 ~ 26154566 (+) True XLOC_009955
TCONS_00019835 mRNA downstream 45698 26680508 ~ 26717597 (+) False XLOC_009965
TCONS_00019836 mRNA downstream 45701 26680511 ~ 26717438 (+) False XLOC_009965
TCONS_00019837 mRNA downstream 71709 26706519 ~ 26710920 (+) True XLOC_009965
TCONS_00019838 mRNA downstream 97276 26732086 ~ 26757649 (+) False XLOC_009966
TCONS_00019840 mRNA downstream 101084 26735894 ~ 26757230 (+) False XLOC_009966
TCONS_00019829 other upstream 143750 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 189586 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1259553 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1259821 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 1329527 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019834 other downstream 5867 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 571859 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 589726 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 590374 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 780887 27415697 ~ 27415812 (+) True XLOC_009977

Expression Profile

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