RNA id: TCONS_00021945


Basic Information

Item Value
RNA id TCONS_00021945
length 931
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_009960
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26509385 ~ 26511109 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atccattcatccacttGGGGGAAAAGCACATTCTGTCAAACAAACTGAGACATTCAATTCCAGATCTGCCCAGAACAACAATTCCCTGACATTTAATACAAGCACACATTATTCACTTTAcaaacactctctcacacacacacacacacacaaaaacacacacaccacacacacacacacacacacacacacacacacacacacacacatgcacacgcacacgcacacgcacacacacacacacacacacacacacacaaacacacacacacacacacgtgcttgCAAagtctttaaaacacacacagacacacacaaaatccCGCTGCCCTCTAGTGGTCTCAAACAGGCCAATCTGGATCATTTGGGATGTGTGTTTGATTACAAACAATGgtctttttgcatttttaaaaaaaatttatatttcaagTAAAAGCTCCACCAACCTTTCCTTTTGATTAGCCGTCATGTTAGCAACCATAAAAAGATAAATATCTACAACGCAAGGTTCCAGTATAAGCTTTAAGCATTTTAAGGTGCTTCAGTAAAGTGTCCACATGCCCCCCCTCCAGAGTGTACAAATCAACAGATGATCAGATAATCATTCAGATCATCTGTTTCAGCAGACTTATTTTAGAGGAGCTGGCAGAGGTGACGTCATTTTTGATCAGCTTTTTAGGGATGGATTTTTCTGATCACGTAGAGTTTGTTGAATAGGCTGACTCTGCCAAAGTCTGTCAATCATAGTGAGAGTAATGACTGAGCATTGGTCAGAAACACTTGTGGAGGGACGGAGCAACTTTCAGATATTACTCCTCGTCTGCACTCTTCAGCATGAGGATAGAGTTATAAATTTTGAGAGCAGGACCGAGCTTGATGCTCAGAATCTTTACAATGTCTGATTGAGTAAGGAGCAGGAAGGCCTCGCCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019830 lncRNA upstream 13492 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021719 lncRNA upstream 29725 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019826 lncRNA upstream 65490 26441350 ~ 26443895 (+) False XLOC_009957
TCONS_00019827 lncRNA upstream 65490 26443304 ~ 26443895 (+) True XLOC_009957
TCONS_00021944 lncRNA upstream 428669 26074711 ~ 26080716 (+) True XLOC_009954
TCONS_00021946 lncRNA downstream 20668 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00019846 lncRNA downstream 266364 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00019855 lncRNA downstream 713263 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 1032199 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00021948 lncRNA downstream 1032388 27543497 ~ 27556789 (+) False XLOC_009979
TCONS_00019828 mRNA upstream 21216 26449615 ~ 26488169 (+) False XLOC_009958
TCONS_00019824 mRNA upstream 63064 26439518 ~ 26446321 (+) False XLOC_009957
TCONS_00019825 mRNA upstream 65422 26439939 ~ 26443963 (+) False XLOC_009957
TCONS_00019822 mRNA upstream 354819 26113457 ~ 26154566 (+) True XLOC_009955
TCONS_00019821 mRNA upstream 487317 26020886 ~ 26022068 (+) True XLOC_009953
TCONS_00019831 mRNA downstream 36043 26547152 ~ 26600624 (+) True XLOC_009962
TCONS_00019832 mRNA downstream 90255 26601364 ~ 26634810 (+) False XLOC_009963
TCONS_00019833 mRNA downstream 101292 26612401 ~ 26635305 (+) True XLOC_009963
TCONS_00019835 mRNA downstream 169399 26680508 ~ 26717597 (+) False XLOC_009965
TCONS_00019836 mRNA downstream 169402 26680511 ~ 26717438 (+) False XLOC_009965
TCONS_00019829 other upstream 51771 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 97607 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1167574 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1167842 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 1237548 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019834 other downstream 129568 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 695560 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 713427 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 714075 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 904588 27415697 ~ 27415812 (+) True XLOC_009977

Expression Profile

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