RNA id: TCONS_00019824


Basic Information

Item Value
RNA id TCONS_00019824
length 3735
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_009957
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26439518 ~ 26446321 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGCGAAAACGTTGAACAGCTCGTCCTGACATCGCTTCCTCTTTTAATTTACCCACAACACGTCTAACTTTTTCAGCAAACACGAGAGGATACGTGTACTTAATATCGTTATTTATAAAACAGCGTTTAAACTCTCCTACCGATATAACATTAGTAGTGAAAGCGAAACTATAGCTCGGATCCGACATGGCAGATAGCAGTGACGATGATATTACAGACAGGCCACCTCTTCTGGAGACAGACTTAACGTGTCCTGTGTGCAAAGACATTTTTAAGGAGCCCGAGTTGCTTTCGTGTAGTCACAGTTTCTGTAAGGTATGCCTGGAAGGGAGCTGGAAGAATCAAACGAAACGGCAGTGCCCCATGTGCCGAAAATGCTGCGACGGAGAGACGCCGATCCCCAACCGTGCACTACATAACGCCTGTGTGTCCTACAAGAAAGAGAGAAACCGGAGAGGAGCTACTACGGGTTCAGAGGAAGAACTCTGTGGTTTGCACCAGCGGCCCTTCCAGCTCTTTTGCATCAAAGACGAAGAGCCCGTGTGCGTGGAGTGCGTGACTCTTCATCCGGGACACGAGCTGGTGCCCACCGAGCAAGGGGTTCCTTTCTGCAAGGATGAGCTTACCATGAAAATCAAAATTCTGGAAGGCAAACTGGACTcctttaaaagaatgaaaaaaagataCAAAGAAACAATCACCTTTATTGAGGGCCAGACTAAGGAGGCAGAAAACCAAATCAAACAGGAGTTTGAGAGACTTCATCAAGTCTTAAATGAAGAGGAGAAATCAAGATTGTTGGCTTTAAGTAGAGAGGAAGACGAGAAGAAACAAGTGGTGACTGAGAAGATTGAAGCCATCGGTCGTGACATCACAGGCCTTGCTGAACTGATTCAGTCTGTAAAGAGGGAAATGGGAGCTGAAGATTTGACCTTTCTTCTGAATTTCCAAAAGTTAAAAAGAAGAACCCAGTGGACTGGTGATGACCCCAGAAGGGTTAACGGAGCCCTCATCAACATGGCCTTGCATGTAGGCGCTCTGGGTTACAAAATCTGGGAGAGTATGCAGGCTCACGTCACATGTTTGCCTGTAATCCTGGATCCCAACACAGCTTCACCATGGCTCTCCATATCTCCTGATTTTTCCAGCATGCAAGAGAGTCGAGAAAGACAGTCTTTCCCAGACAACCCTGAGAGGTTTGATCCATGTGTGTTTGTACTCGGCTCAGAGGGTTTCTCCTCAGGGCGCCATCGTTGGGAGGTCCGTGTGGCCGACCACCCCAAATGGATCTTGGGTGTTTGCAAGGAGTCAGTAGTTCGGAAGAGGAAGTTCACTGTGACCACAACAGCAGGAGTTTGGACCATCGGCCTAAGTAAAGGTGTCTACAACGCTCTAACAAGTCCACGCACTGTGCTCAATCTAGAGAGAAGACCCGAAACTGTCAGGGTGAAGGTCAATATGGAGAAGGGAGAGGTGTCTTTCTGGGACACAGGCAACAACAAGCATCTGTGCACGTTTAACGATAAGTTCACTGGGAAGCTCTTTCCTATCTTTGGCCCAGGGCTCCAGAGCACACCAATCACTATCTTACCTGCTAAAGTAAACATACACAAACAATAAGTACAAATGACAACGCGTAAGAGTCTAAAATGTCTGCAGTACTATTTGAATTTAaccaaatttatgtaatatttggAATTCTGTAAAAGGTCAATCAACAGATTTTGTATCATAATGATTCATATTATTTTATCATATCGCTCATTTTGTTAAGGAAGAACTTGAATTCACATCAAACatatacatttagtcatttggcaGACTTTTTTTGTCCAAAGCATCTTACAATTAAGGAAACATTCAACAAATTAACACAAAGAGGCAACACACACcggaagtgctaattatacaaaggaactgttagtgTTCAGAGAATTCAATGCTAGAGTAAGggagtgttttgtttttgagagggaagtgaagagtgtttctacaggtggtttgtcaagcccactcacttgtgtgaagcacacttcataaatgcgtGATGGTTTTTATGTGGGTGTGTGTAAGAATGTGTCTTGTGCGAATGGGAACCAAAAACTGGTCCAGTGTCAGTTAAAGTGTCAGGTGTGTCAGTGTATTCAGGTGACCTCAGATGAGATGAGTTCTTAGTTGTCACTTGAATGATACCAGCGAATCCGCAGTCTGTGTGGGAATGGCAAGATCGTTCCACCAGTACGGAACATTGAATGAACAGGTTTTGGAAAGCGACTTTGCAATGACACCACAACTTGCTGACCGGACAACTATGCTGATAACAATGCTGATTAAGATGTAGTTTGAGAAAACATTGTATTGAAACATAACAGTAATATTGAAAATAACTCCACTGTAGCAACACAGAGGGGAATGATATCATGCCAATCACTGTTAACccgtgaccctggaccacaaaaccttaAGTTgcactaataataaacaaaaaacattgtagGATTCaaccttattttaattttatagcaaaaatcattagaatattaatattattcccAGCATCTTctgtaatttttgtaatttatgtaAATTTATTTCCAATAATGTATCAAAACTTTGTTTTAAGTAATATACATTGCTAAGAATTTAATTGGACCTCccttttaaagtttaaaagaatttaaactTAGAAGTGGGTTTCTcaatatttagactttttttttaagtctcaGATTCCTTTTTCACCTAGTTTCATCtctaattaaaacattaattatattttcaaaaataccctttgacgttttttttttttttttttggttcaaggTCACATTTTCTTTGGCTGATATTATGGTAAAACACTGAGAGCAGACTTTGATCCACCAATCTAATTAAAGAGTTTAAACAATTAAGGCTACAGAAGAGATAACTGCAATGTGCACTTTTAATAAATGGAACATTGAATGTTAACATTGTTATCATTATAGTTATCTGTTTAGTTGTTCTCTGTGTTAGAGACGTTATGACGAGAATTGTGTCACTGTAAGTAAATAGAGCTAAATGTTAATTCTCAACAtcactaaacaaaaacaatgtctgTGCTGACATGATTTTGCAGTGGGAAAATCACTTGCTAACCTTTTCTGTTTTGTGTCTAGTTTTACAAATTCTTCAATCTGACAATCTAATTCCAAAAACCCTAAAGCCATTTTAATGACTGTAAACATAATTGTAATGGGGTCAGCTTTATTGTAGATTTTAAAACTTGTGTTTTTATAAAATTAGAAACTTCAAATCCTTAAAAAGCCTATCCCTTCTCTTCTGTCATAAGTGAACATGACCTTTGATTGCGgcttttttctgtctgtctttctgtctgtctgtgtgtgtgggtgtgggatTTGAGTTGTGTTTTAAGtggaagtaaaaaaaatagagtgAGTGGTGAACAGATATTGCCATACCATCTGTTTTGCTTCTACAGCACTATTGATTAAGTAAATAAAGTCTCAATCACATTCAAATCTTACACCTCGCAATACTGCTGCTGAATGACAAtgtcaaaataaatctgaaacTCTGAAATTGTAACCTATATAAATACTGCATTTATGGTCTTGAGTTGTTTTGTTGAAGCAACTATTTTTTATTGCATGTCAGGTATGTTTATTTACAACATGTAAAGCCAAATTTTGATGAATTATAAGAATAAATGATCTCACTTATTGGACTAAATG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-19 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000041787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021944 lncRNA upstream 358802 26074711 ~ 26080716 (+) True XLOC_009954
TCONS_00021943 lncRNA upstream 479360 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00021718 lncRNA upstream 608442 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021942 lncRNA upstream 610760 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021941 lncRNA upstream 859691 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021719 lncRNA downstream 32842 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019830 lncRNA downstream 48435 26494756 ~ 26495893 (+) True XLOC_009959
TCONS_00021945 lncRNA downstream 63064 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00021946 lncRNA downstream 85456 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00019846 lncRNA downstream 331152 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00019822 mRNA upstream 284952 26113457 ~ 26154566 (+) True XLOC_009955
TCONS_00019821 mRNA upstream 417450 26020886 ~ 26022068 (+) True XLOC_009953
TCONS_00019820 mRNA upstream 420824 26017360 ~ 26018694 (+) True XLOC_009952
TCONS_00019819 mRNA upstream 425667 26012569 ~ 26013851 (+) True XLOC_009951
TCONS_00019818 mRNA upstream 447875 25989943 ~ 25991643 (+) True XLOC_009950
TCONS_00019828 mRNA downstream 3294 26449615 ~ 26488169 (+) False XLOC_009958
TCONS_00019831 mRNA downstream 100831 26547152 ~ 26600624 (+) True XLOC_009962
TCONS_00019832 mRNA downstream 155043 26601364 ~ 26634810 (+) False XLOC_009963
TCONS_00019833 mRNA downstream 166080 26612401 ~ 26635305 (+) True XLOC_009963
TCONS_00019835 mRNA downstream 234187 26680508 ~ 26717597 (+) False XLOC_009965
TCONS_00019823 other upstream 27740 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1097707 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1097975 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 1167681 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019788 other upstream 1342956 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019829 other downstream 9889 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019834 other downstream 194356 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 760348 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 778215 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 778863 27225184 ~ 27231574 (+) True XLOC_009974

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_06329025_06333271.mRNA True 1592 mRNA 0.45 6 CI01000027 6328719 ~ 6333336 (+)