RNA id: TCONS_00019830


Basic Information

Item Value
RNA id TCONS_00019830
length 658
lncRNA type lincRNA
GC content 0.40
exon number 2
gene id XLOC_009959
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26494756 ~ 26495893 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCGCATAACGTGCTTTACAGTGAAATCTTACAGCGGCGAAACCAAAACACGTTCGGAGCATGGCAAAGAAGGGAGATTTACACATAAATTGATGAGGATCCTGTGCCAGTGGATGCCTAGCATCTGTAACATCATTATTGTTCAGTTCCACAACCCACGGCAGATGATTAATGCACCCGATCAGGCTGACAGTCTCCGTGAGGAGGTGGAGTGACTGAAAGGAGACTGCTTCCATGCTGCTTTTGGTGTTATACAGCTCTAAAGGTTCACAACTTGCATCCTACAACATCCAGAGTAACATGTCCAGAGTAAGCGCAACTGTGAGGGAGACACCGTCCATGGCTGAGGGTCCACACTGAGCAATTCATTCGCAGCATGAAGCAACACAAGCTGGACAGTCTTCATCTCTTTCTATTACAGCAAGCAACCAAACCAGAtttatacaatggcttgccttTTGCACATTAGTAAAAGCTTGAGCTAAATATTAAAGTTCACACACTGTACATAATTTATATGTTGTTGCCTGCACTGCAGGAATATAAAGTTGtcaatataataaacattaattttcagCATATTCATTTAAACATATATTACAGAACAATTTGAGTGAACAATTGCTCTAACTATtgtaaatatgaataattttagAT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148124

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021719 lncRNA upstream 15096 26479163 ~ 26479660 (+) True XLOC_009958
TCONS_00019826 lncRNA upstream 50861 26441350 ~ 26443895 (+) False XLOC_009957
TCONS_00019827 lncRNA upstream 50861 26443304 ~ 26443895 (+) True XLOC_009957
TCONS_00021944 lncRNA upstream 414040 26074711 ~ 26080716 (+) True XLOC_009954
TCONS_00021943 lncRNA upstream 534598 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00021945 lncRNA downstream 13492 26509385 ~ 26511109 (+) True XLOC_009960
TCONS_00021946 lncRNA downstream 35884 26531777 ~ 26533757 (+) True XLOC_009961
TCONS_00019846 lncRNA downstream 281580 26777473 ~ 26782712 (+) False XLOC_009969
TCONS_00019855 lncRNA downstream 728479 27224372 ~ 27227041 (+) False XLOC_009974
TCONS_00021947 lncRNA downstream 1047415 27543308 ~ 27556789 (+) False XLOC_009979
TCONS_00019828 mRNA upstream 6587 26449615 ~ 26488169 (+) False XLOC_009958
TCONS_00019824 mRNA upstream 48435 26439518 ~ 26446321 (+) False XLOC_009957
TCONS_00019825 mRNA upstream 50793 26439939 ~ 26443963 (+) False XLOC_009957
TCONS_00019822 mRNA upstream 340190 26113457 ~ 26154566 (+) True XLOC_009955
TCONS_00019821 mRNA upstream 472688 26020886 ~ 26022068 (+) True XLOC_009953
TCONS_00019831 mRNA downstream 51259 26547152 ~ 26600624 (+) True XLOC_009962
TCONS_00019832 mRNA downstream 105471 26601364 ~ 26634810 (+) False XLOC_009963
TCONS_00019833 mRNA downstream 116508 26612401 ~ 26635305 (+) True XLOC_009963
TCONS_00019835 mRNA downstream 184615 26680508 ~ 26717597 (+) False XLOC_009965
TCONS_00019836 mRNA downstream 184618 26680511 ~ 26717438 (+) False XLOC_009965
TCONS_00019829 other upstream 37142 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019823 other upstream 82978 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019806 other upstream 1152945 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 1153213 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 1222919 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019834 other downstream 144784 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 710776 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 728643 27224536 ~ 27225245 (+) False XLOC_009974
TCONS_00019857 other downstream 729291 27225184 ~ 27231574 (+) True XLOC_009974
TCONS_00019863 other downstream 919804 27415697 ~ 27415812 (+) True XLOC_009977

Expression Profile

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