RNA id: TCONS_00019811


Basic Information

Item Value
RNA id TCONS_00019811
length 2031
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_009941
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25535993 ~ 25548738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGGATAACGGATAGGCGGAGTGAGAGCTGGGTTTCATAAACCTCCTCTCTCTGATTTTCCAATGGGGTGCGAGTCAGCCTCGTGAGCCACAGGTTCTTCTCTCTGCTGTCCCGGGACGAGTGTCAAACTGCTGCATTCAACATGTTATGCCACATAACTCGACCGGACTCGGTGGTCCTGGAGGTGGAAGTGGACCCAAAAGCAAACGGAGAGGACATTCTCAATAAGATATGCCAGAAAATGGGAATAATAGAGGTGGACTATTTTGGACTGCAGTTCACCGGCACAAAGGGAGAGTCTTTATGGATGAATCTGAGAAACCGGATTTGTCAAGAAGTAGACTGTGTGTCTCCCTGCAGACTGAGACTACGGGTCAAGTTCTTTGTTGAGCCACATCTAATCCTGCAGGAGCAAACCAGACATTTGTTTCTGATGCATGTGAAGGAGGAGATTATCAAAGGAAGTTTGCGATTGGACGCAGAGCAGGCGATTGAGCTCTGCGCTCTACTGGCTCAGGCAGAGTTTGGAGATTACAAGCAAAACACAGCCAAATACTGCTACTCCCAGATCTACGGTCAAGACCCCAGCCATGACACCATCAACACcatTTCCTTAAAGCACAAGTCATTGGAGGGTGTCAGTCAGGCCTCTGCAGAGTATCAAGCCCTGCAGCTGGTTTCCTCCCTTACCTACTATGGCGTTGAATGGCACTTCGCACGTGACTCTGAGGGACAGGAACTGCTCATCGGTGTTGGACAAGAAGGCCTGTTTGTCTGCAAAAGCGATTTCACACCTATTGAAAGaCTCATGTACCCAGTTATTCAGATGGCCACTCAGTCTGGAAGGAATGTGTATGTGACCATCACGAAGGACAATGGGGACAGCGTCGTTCTCCTTTTTAAGTTCGTCAGTCCTAGTGCTGCCAATGGACTATACCGCGCTATCACAGAGATCCACGCCTTCTACAGGTGTGACACTGTAATGAGCACAGTGAAGATGCAGTATAGCCGTGACTTTAAGGGTCACCTGGCCTCCCTCTTCCTCAACGAAAGCATTGACCTCGGTAAAAGGTACATCTTTGACATTCAGCGCACATCTAAAGAAGTGTATGACCGTACCCGACGAGCCCTGTTCAATGCGGGCGTGAGTGTGAATGGACGTGGGATCAGTCGTTCTCCGCTGAGAAAGACTAAAGTGGACCGGGAGGAGCGGATGTGTGTCGACTGCAGAGAAACTCACGTTCTGAAGGAGAAGCTGCAGAGGCTACAGGAGGCCCTGACCTGCGCTCTGTGCTGCGAACAGGAGATCAGTGCCGCTTTCTGTCCATGTGGACACATGTTCTGCTGCTATAACTGTGCCAGCCAACTGCAGTGCTGCCCGGTGTGCCGTTCAGAAGTGGATCGTGTTCAACATGTCTATCTACCTACCTGCGCCAGTCTACTAGGCCTGGCAGAGGCAAAAACCACCAACAGTGTGCTCAGAAGGACTGGCATCTCAGAGGATTGTGCCAATAAAGAAAATGCCCGTCAGATGTAGAATGGATAACATCTGCTCATCGCACATGACCAGactgttttaaaatgtcatcAAATATTCAGTGAGGCCGGTTATCTGCAAATACCTCCAAAAACAATGACTACTGCTACTTCATAGTGTTTTTAACAGTATTAACAGGCGTAAGAGGCGATCAACACTTTTACACTGGAGTTCACTCATAGGAGCAAGTATTATGCGTGGTACAGCAATATTTCATATGATTGTTAACTATATGCAAAGGGTTTATTTTCAGGTTAACACTCCATATCAACTGTTTTTTAGGGGTTTAAACGTTTTATGTGGTTCTGTGTATGCAGTTTTATCTTGGAAATGTTTCAAACAGTCACTTTTGTAAAATGTACTTGGTGCTACTGCAGTTTTCAAAAAATTCTAATTTGAGCACACGAAGGTTCAAGTAACAGAATTGTATCCTCTTTTATATTGAcgtatttcacccatattttggaATGAAATAAATAGCGTTTGCACacca

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-67 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in gastrulation; negative regulation of Wnt signaling pathway; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Orthologous to human MYLIP (myosin regulatory light chain interacting protein).

Ensembl:

ensembl_id ENSDART00000077436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021937 lncRNA upstream 293683 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA upstream 293683 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA upstream 293683 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA upstream 300900 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00021936 lncRNA upstream 322015 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021941 lncRNA downstream 3584 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021942 lncRNA downstream 265531 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 281966 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 410158 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00021944 lncRNA downstream 525973 26074711 ~ 26080716 (+) True XLOC_009954
TCONS_00019810 mRNA upstream 35264 25407079 ~ 25500729 (+) True XLOC_009940
TCONS_00019809 mRNA upstream 35737 25407021 ~ 25500256 (+) False XLOC_009940
TCONS_00019807 mRNA upstream 175205 25342152 ~ 25360788 (+) False XLOC_009939
TCONS_00019808 mRNA upstream 175226 25343934 ~ 25360767 (+) True XLOC_009939
TCONS_00019804 mRNA upstream 198159 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019812 mRNA downstream 60040 25608778 ~ 25643226 (+) True XLOC_009944
TCONS_00019813 mRNA downstream 115340 25664078 ~ 25672591 (+) False XLOC_009945
TCONS_00019814 mRNA downstream 115649 25664387 ~ 25672485 (+) True XLOC_009945
TCONS_00019815 mRNA downstream 212363 25761101 ~ 25800819 (+) True XLOC_009946
TCONS_00019816 mRNA downstream 257662 25806400 ~ 25811654 (+) False XLOC_009947
TCONS_00019806 other upstream 194182 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 194450 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 264156 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019788 other upstream 439431 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 617036 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019823 other downstream 862908 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 907472 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019834 other downstream 1091939 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 1657931 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 1675798 27224536 ~ 27225245 (+) False XLOC_009974

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05931114_05936800.mRNA True 1468 mRNA 0.47 7 CI01000027 5931114 ~ 5936957 (+)