RNA id: TCONS_00019807


Basic Information

Item Value
RNA id TCONS_00019807
length 3701
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_009939
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25342152 ~ 25360788 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCGCCATATTTGTTGTCGCAGATTCGACAGAAACCCCTGCAAGAAGTAATTTAAGCACAATGAATGCTTTAAAATGGCTCGATAGTTGTAAGAACAAAGATCAGAAATATTTCCGAGGTGTTTTTATGCATTACTGATTTAAAAAGAATGGATACAGCGCAAGCAGATGGTTCGTCAGTCTTCATGTGCAAAGGCTGCAACTTGTTCTCTCCCAAAAAAACACTGCTGCTCTCTCATGTTGTTGAGGCTCACTCCAGTGAAGGAGGAGATCCTGAGACCTTCATTATAGCACTTAAACCATTAACAACTCAGGAGACCCAGAATTCAGAAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATGGTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTGGTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAGGTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCCACAAAATACCAAGCCTTGCAAGCCCACATCCGAAAGCATCCCTTCATCTATGTGTGCGCCATTTGCCAGGAAAAGTTTGTCAGCTCTGTTCGGCTGAGGTTGCATCTCCGAGAGCTCCATCAGGAGTTGGATGAGCTTTCAGCGTTTGCAGACTCCATCAAATCCAGCTTTTGCTTGCTTAAGCCAGGTGATGACATTCAAAAGGACATGTTGAGTCAGGATGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATgccataaatacgcaaataactCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTGGTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATAGTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAGATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAGGACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACGGAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAACCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAGGTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAGGTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATGGTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAGGTGGAGGAAGAGGAGCCTCAGAGCAATCATGCCATGATGATACAGGATGCACTGCAGCAGGCTACCGTGGGTCTGGGAGAAGAGCACCATCTAGTGGTGTCATCAGATGACATGGAAGGGATCAAAACAGTCACAGTTTACACGCAGGGAGAAGACGCTTCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAGACTGAGGAGACCACGgtataaacattattaaagccATGCATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130204-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

Ensembl:

ensembl_id ENSDART00000156351

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021937 lncRNA upstream 99842 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA upstream 99842 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA upstream 99842 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA upstream 107059 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00021936 lncRNA upstream 128174 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021940 lncRNA downstream 183638 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00021941 lncRNA downstream 191534 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021942 lncRNA downstream 453481 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 469916 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 598108 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00019804 mRNA upstream 4318 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019803 mRNA upstream 27016 25296389 ~ 25315136 (+) True XLOC_009935
TCONS_00019802 mRNA upstream 46967 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019800 mRNA upstream 69519 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019799 mRNA upstream 91738 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019809 mRNA downstream 46233 25407021 ~ 25500256 (+) False XLOC_009940
TCONS_00019810 mRNA downstream 46291 25407079 ~ 25500729 (+) True XLOC_009940
TCONS_00019811 mRNA downstream 175205 25535993 ~ 25548738 (+) True XLOC_009941
TCONS_00019812 mRNA downstream 247990 25608778 ~ 25643226 (+) True XLOC_009944
TCONS_00019813 mRNA downstream 303290 25664078 ~ 25672591 (+) False XLOC_009945
TCONS_00019806 other upstream 341 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019805 other upstream 609 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019801 other upstream 70315 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019788 other upstream 245590 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 423195 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019823 other downstream 1050858 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1095422 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019834 other downstream 1279889 26640677 ~ 26643826 (+) True XLOC_009964
TCONS_00019852 other downstream 1845881 27206669 ~ 27206797 (+) True XLOC_009973
TCONS_00019856 other downstream 1863748 27224536 ~ 27225245 (+) False XLOC_009974

Expression Profile

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