RNA id: TCONS_00019803


Basic Information

Item Value
RNA id TCONS_00019803
length 3611
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_009935
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25296389 ~ 25315136 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTGCATCTTGCTATTTGGTTCTTTCTTTATTTGAATCCCTTAGTAACTTCTAACATAAACACGTATTATCAATAGAATTATTCTCGACGCGGGAATAAGGTTTAACAACAACCACGACAGTGAGTTTTTAGTGAATGTCGGAAAGTTGAATTTCCCGCTGCGATGTGCGTGTGAGGCGCGAGTAATGTTTGCTGGAGAATCTCAGTCCATGCTAAACAAACATGCAAGTTACAGATATCGGGTCAAGAGAAGACGGGAAAATATGGCACCGAAAATCAGTATCAAAAAACGGCGTTCTGGCCACTGTGATCCGCAACTCGTCTGCTCGTCAAACCAAGACGGTTCGATTCCTGCAAGTGGCTTTCGACACCACCGGAGAGTCGTTTCTTGCTGGTGATCATCATGGGAATATATATGTATTTGACATCTGCAGAAACAGATTCAAGCTTGTCCAGAAAACAGGACAGGCATGCACTGCTTTAGCCTTCAATTTAAGAAGAACCACTGAGTTCCTGGTTGCTCTGGCTGATTACTCCATCAAGTGCTTTGACAAAGACACCAGGCAGCTCGTGAGCTGGATGCGGGGTCACGAAGGTGCCGTTTCCTCCTTGTCCATCCATAGCTCAGGCAGCTTCGCCATCAGCACGTCTTCTGACACCGCGCAGCTCTGGAGCCTCGACACCTTCCAGAGAAAGAGGAAGCTCAATGTTCGTCAGTCGGTTGGCATACAAAAGGTGTTTTTTCTCCCACACAGCAACACCATTCTTAGCTGCTTTAGCGACAATTCCATTTTTGCTTGGGAGACCGACACTCTCTTCTGCAAATATCAACTGCCTGTTCCACAGAATGGGCCCAGAATTCACTACAGGACTTTTGCTGTTACACAAAATGGAAAAACACTTGCTGCTGCTGGACGATCCAACCTTGTCCACTTGTGGTGTCTGGACAGTCAACAGCTCATCAGAGTAATTCAGATGCCTTCAAATGTCAAGACAGTAAGATATCTGGATTTCCTGCCAGATAGTTTTGATGACGGATCCAACCAGACTCTAGGTGTTTTAAGCCAAGACGGCATCATGCGCTTTGTCAACATCCAGTCATGCAAGCAGCTCTTTTTAATCGGATCCCACGAGGATGCAATCAGCTCTGCAACTGTTTGTCCTAAAGGTCACCATATTGTCGCAGTGATGGACAGTGGAGCTATTAAAATCTATGATGTGCGAAGTCTCACCACAGAAATCAGTAAGCCTCCTCAGCCTTTGCTGAAACGGGTCACTAAAGTTAACATCAGTGATGGATCATGTCTGAAAATGAAGGTTAACACTGGGGCAGGTCAGCGCGCTGTGAAAACATCAGGACGCAGAATCCAATCCAAACTTTTACCACCTTCAGTTTCTACTCTGGATGACAAAGAGAATGATTTGCCTAATGGCCTAAGCAAGAAAAGACTACAAGCGTTGCTAAGAGAGTTTGGCGAGTATCCAGCAAAATACAGAATGTTTATTTGGCGTTCCCTGTTGCGTTTACCAGAGAACCATGCAGCTTTCAGCAGCTTGACTGATAAAGGCCTGCATTCAGCCTTCCTGTGTCTTCAGGAGCAGTACCCCATCAAAAGCCACAAACTACAAAGAGGCCTGCAGAGAGTGTTGTCTGCTCTTGCTCACTGGGCTGCAGTCTTCGGTGAGACTGATTATGTCCCCCTGCTGGCCTTCCCATTCGTCAAGCTGTTCCAGAACAATCCTCTGATCTGCTTTGAAGCAGTGGCCACTGTCATTGTGAACTGGTGCCAGCACTGGTTTGAGTATTTTCCCAACCCTCCGCTTAATGTGCTGAGTCTGGCTGAGAATGTGCTGGCCCATCATGATAAAGAGCTGCTTCAGCATTTTGTTGCCTGTGGCGTTACCTCACAGCTGTATGCGTGGCCTCTTCTAGAAACTCTGTTCTCTGAGGTTCTGATGAGAGAAGAGTGGCTGAAGCTATTTGACAATGTTTTCTCCAATCATCCCTCATTCCTGCTAATGGCTGTGGTGGCGTATGTCACCTGCTGCCGAGCACCGCTACTGCTCTGCACTGACAAGAGAGATTTTGAGTACTTTTTCCATCATCGCAATAGTTTGGACATTGGTGCTATGCTGAAGGAAACCTATCGGTTGATGGACAGAACCCCTGCCGACATCCATCCTAGCTCTGCGCTGAATGATTTTGAACCTCTGACTCAGGGCCAGTATCCTGTCTTCAACAAATACCCCACATTCATAGTGGAGTACCAGTCTCAAGAACGCGAGAGGATCCGCCAACAAGAAGTGGAATATCTGAGAGAGAGACAGGAGGTTCAGAAGCTGCATGCTGAGGCGGTCAGACAGCAGGCTGAGTTTGAGGCCTGGTATAAACAGCAGGAGCTGCTTCTGCAAGGAGAAGAGCAACGGAGACTAATCCTACAGGAAGAGGAGAGTAAACTCGCACAACAGAGAGCCAGattggCCGCCATGAAGCGCGAGCTGAAGGTGAAGGAACTCAGTCTGATTGATTCCTCCAGAAGACGTTTTCTCAAACACCAGCAGGATCAGCGCAGAGTACACCTCAAGAGACTTGATGATGAGATTCAGAGAAAGATGGCGTTGCGCGATCAGGAAACAGCGGCCGCCGTTCAAGAAGTAGAAGTCAGACAGATGGAACTGGATGCCCAGAGACAACTGTTTGAACAGCAACTGGCCAGAGAGCAAGAGCGAGTGAGTCAAGAGGTGCGAGCAGAGGTGGATACGAGGAGCCGGAGGGCTGAGGCTGACCATTATACATTTCAAAACTTCATTCTCGCAGATGCAGATATCAGCCAGAAAAACCAGAAGATGCTGGTGGAGGAATCTCTGGCGGAGGCGGGGCAGATGGAGGTGGATGCTGATTGGCAGGCTGAGGTGATCAAGAGACTGGAAGAGGCAAAGGAGAGGCAGGAGAAGCAAAGAGAGAGACTTGTGAACCTCGGCAAACAAACACGCGATAAAGAGGATAAAGTAGTCCAATTAATGCAGGAAGTGGAGGGAAAGCAGTGGGATGATATAGTAGCCAAACAAGCCGAACGTGAGGACAAAAGATGGGCGGCTACTTCTGTTACCACTCAGCCGAGGTCATTTATCTCACAGGAAACAGAAGAGATCGAGCAACACAGCAAACCACACAAGACCCTTGATGATTCACTGAATCCTCAGAAGGAAAAGAGACGTAGATCTCCTTGCTCGTCCAGAGGGCTTCTGTACAAACCCACTGACATTTCTTCAAACAATCAGTCAGACTTTTCTTTAGATCGCAACAGAGGGGAGCTGGACTCAAAGGAAAGGGAGTTGATGCAGGAAATCAGAGAACTGAGGATGAAATTAGCAGCCAGAGCCAGAGCAACTGATTTTATCTCAGCTTCAGCCAGCTCCATACATTCACACTGACCACACTGGAGTAGTGTGTGTAAAAACGTAGTAAAGGATCTGACTGAAGATgtggtttctttctttttttttattcatatttttaagttaaatgtcctgttgtatatatatttttttattttttttatttaagaattgAAAATGTGTTGGAGTGTAATAAAATGAGTTAATGTA

Function

GO:

id name namespace
GO:0005813 centrosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061218-4 Predicted to be active in centrosome. Orthologous to human TBC1D31 (TBC1 domain family member 31).

Ensembl:

ensembl_id ENSDART00000114528

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021937 lncRNA upstream 54079 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA upstream 54079 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA upstream 54079 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA upstream 61296 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00021936 lncRNA upstream 82411 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021940 lncRNA downstream 229290 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00021941 lncRNA downstream 237186 25552322 ~ 25579827 (+) True XLOC_009943
TCONS_00021942 lncRNA downstream 499133 25814269 ~ 25828758 (+) True XLOC_009947
TCONS_00021718 lncRNA downstream 515568 25830704 ~ 25831076 (+) True XLOC_009948
TCONS_00021943 lncRNA downstream 643760 25958896 ~ 25960158 (+) True XLOC_009949
TCONS_00019802 mRNA upstream 1204 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019800 mRNA upstream 23756 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019799 mRNA upstream 45975 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019798 mRNA upstream 95632 25196572 ~ 25200757 (+) True XLOC_009928
TCONS_00019797 mRNA upstream 108580 25184207 ~ 25187809 (+) True XLOC_009927
TCONS_00019804 mRNA downstream 1837 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019807 mRNA downstream 27016 25342152 ~ 25360788 (+) False XLOC_009939
TCONS_00019808 mRNA downstream 28798 25343934 ~ 25360767 (+) True XLOC_009939
TCONS_00019809 mRNA downstream 91885 25407021 ~ 25500256 (+) False XLOC_009940
TCONS_00019810 mRNA downstream 91943 25407079 ~ 25500729 (+) True XLOC_009940
TCONS_00019801 other upstream 24552 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019788 other upstream 199827 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 377432 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 398136 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 415171 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019805 other downstream 26280 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 26588 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1096510 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1141074 26456210 ~ 26457614 (+) False XLOC_009958
TCONS_00019834 other downstream 1325541 26640677 ~ 26643826 (+) True XLOC_009964

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05807381_05817636.mRNA True 3441 mRNA 0.46 21 CI01000027 5807029 ~ 5817665 (+)