XLOC_009936 (dync1i1)


Basic Information

Item Value
gene id XLOC_009936
gene name dync1i1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25316973 ~ 25337834 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019804
GCTTTTGGGTGCTGATGAGACTGAAGTGATCTGATGATGCTTTGTGTTTTCATGTAGCTGTTGATGCTCATGTGTAGATTTGTAATCTCTTATTTTAGCATTTACACGAGAGTGCGCTGCAGATTTTGCCCTGGTTGTGTCGACATAAAGACGATCGAGCGACAGAGAAGATGGCTGATAGAAGTGACCTGAAAGCTGAGCTTGAGCGCAAAAAGCAGCGCTTAGCCCAGAttcgagaggagaagaaaagaaaGGAGGAAGAGAGGAAGAAGAAAGAGTCTGAGATGCTTCAGAGGCCTGAGAATGTGACCGAAGACTCAGATCTAGACAGGAAGAGAAGAGAAACAGAGGCTCTTCTGCAGAGTATTGGCATTTCACCTGAACCACCATTAGtcCCAACCCCTATGTCTCCCTCTTCGCAATCAGTGAGTCCACCCAGCGAAACTGGAAGCCAGGAGTCCATAGATGGAGGGACAGTGGAAAGGACGTTGCAGTGGGACACTGACCCCTCAGCTCTTCAGCTTCTTGCAGATTCTGTTCATGGGTGCAGGATGCAGAGGCTTGGAGCATCAAAAATTGTTCAGATTGATTTCATGCCAAAAGAGCTGGTGACATACTCTAAAGAGACACAGACCCCTGTCGCATCAAATCAGCCTGAAGAAGAAGACGATGAGGAGCTGTCAGTGCCCAAATCTGAGCCGGCGTCACAACAGCTGGAAGAGGAGAAAACTCAGGAAGTAGAAGAAGTTCATCCCAGAGAACTGACCAATGAGGAGAAAGAGCAGATTGTTCATTCGGAGGATTTCCTGTTTTTCTTCGACCGGAGCATCCGTGTGGTGGAGCGAGTGCTGGCCGAGGACAAGGACATTTTCTTTGACTACAGCGGGCGAGATATGGAGGACAAAGAAGGGGACTTGCAAGCCGGATCAAACTTGTCTTTTAACCGACATTTCTATGATGAGCATTGGTCCAAACATCGAGTCGTCACTTCCCTGGATTGGTCACCAcagTATCCCGAATTGCTCGTGGCCTCGTACAACACTAATGAGGATGCGCCTCATGAGCCAGATGGAGTTGTTCTTGTCTGGAATATGAAGTTTAAGAAGGCGACCCCTGAGTACATTTTCCACTGTCAGTCCTCAGTGATGTCAGTCGGCTTTGCTCAGTTTCATCCCAATCTGGTGATTGGAGGCACTTATTCAGGACAGATTGCAATGTGGGACAATCGAAGTCACAGAAGGACCCCGGTGCAGAGGACACCTCTATCTGCAACTGCACACACTCATCCTGTATACTGTGTGAATGTGGTGGGAACACAAAATGCCAACAATCTGATTACAGTATCTACAGATGGCAAGATGTGCTCCTGGAGTCTGGACATGCTCTCACAGCCTCAGGAGAGTATGGAGCTGATCTACAACAAGTCAAAGCCTGTGGCAGTCACTTGTATGGCCTTCCCTGCGAGCGACGTCAATAACTATGTGGTAGGAAGCGAGGAGGGAACCGTTTACACAGCATCCCGTCATGGGAGTAAGGCTGGTATTGGTGAAATATTTGATGGGCATCAGGGGCCAGTGACTGGAATCAGCTGCCATAATGCTGTGGGTCCGGTTGACTTCTCCCATCTCTTTACCACTTCCTCATTTGACTGGACAGTCAAACTGTGGTCAACTAAACATAACAAGCCCCTGTATTCCTTTGAAGACAATGCAGACTACGTATATGATGTCATGTGGTCTCCAGTTCATCCAGCACTCTTCGCTACAGTTGATGGAAATGGTCGTCTTGACCTCTGGAACCTTAACAATTACACAGAGGTGCCTTCAGCCAGTGTAAGCGTGGAGGGAGGATGTGCCCTGAATCGGGTCAGATGGGCATCAGGTGGCAGAGAGGTGGCGGTGGGGGATTCAGAGGGTCGTGTTTGGATCTATGACGTGGGAGAGCTGGCAGTGCCACATACAGACGACTGGAGTAAATTCGGCCGGACGCTCATGGAAATTCAAGCAAATCGAGGGGATGGAGAGGAAGAAGGAGCTCTGGAGCTGCCAGCCTgagacacgcgcacacacacctcCACGTTCAGTTAAAAGATACCCACAAGCAGATGCTTGAATTGAGTGAATCACACATCAACCCTGCTGTGATCACAGGTTTTTTCCTTTTGCCTACAAAAGTCTATTTATAGCATGGGTGTTAATACAATAACTGCTCTTCCAGTGCTAATAGGTGATTCCAGAACAAACATACACAGGTAAAGATGAAATGAATGAGCCTGGACTAATGTATATTTAGGGCTTGCAGTGACTATATATGAGTGAGCCTGTACTGTGTCAAAACTGCTGAGCTGGAATTATTAACGTCAGCTTATTTTACATACGTCAATATACAAGGCCATATGGTGAATGTATTGGCTATGATGTTAAATTACAGCAAATCTTAAGAATGTGACTGTTTTCGCTTTGACCttttacattgtgtgtgtgtataatttaaCACCAACTAACAAGTGTGAACTTACAATAAAGGTCATTGTGTTTCA

Function

symbol description
dync1i1 Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Predicted to be involved in transport along microtubule. Predicted to be part of cytoplasmic dynein complex. Orthologous to human DYNC1I1 (dynein cytoplasmic 1 intermediate chain 1).

GO:

id name namespace
GO:0010970 transport along microtubule biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0045503 dynein light chain binding molecular_function
GO:0045504 dynein heavy chain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-62 Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Predicted to be involved in transport along microtubule. Predicted to be part of cytoplasmic dynein complex. Orthologous to human DYNC1I1 (dynein cytoplasmic 1 intermediate chain 1).

Ensembl:

ensembl_id ENSDARG00000060948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019804 True 2539 mRNA 0.47 17 25316973 25337834

Neighbor

gene id symbol gene type direction distance location
XLOC_009935 tbc1d31 coding upstream 1837 25296389 ~ 25315136 (+)
XLOC_009934 si:dkey-29h14.10 coding upstream 21788 25285998 ~ 25295185 (+)
XLOC_009933 fbxo32 coding upstream 44340 25259313 ~ 25272633 (+)
XLOC_009932 klhl38b coding upstream 66559 25245857 ~ 25250414 (+)
XLOC_009930 NA coding upstream 74663 25219435 ~ 25242310 (+)
XLOC_009937 dre-mir-30d coding downstream 3582 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b coding downstream 3890 25341724 ~ 25341811 (+)
XLOC_009939 zfat coding downstream 4318 25342152 ~ 25360788 (+)
XLOC_009940 jarid2a coding downstream 69187 25407021 ~ 25500729 (+)
XLOC_009941 mylipb coding downstream 198159 25535993 ~ 25548738 (+)
XLOC_009931 NA non-coding upstream 81880 25233953 ~ 25235093 (+)
XLOC_009929 NA non-coding upstream 102995 25207618 ~ 25213978 (+)
XLOC_009913 BX539313.2 non-coding upstream 398016 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 418720 24898171 ~ 24898253 (+)
XLOC_009942 NA non-coding downstream 206592 25544426 ~ 25550654 (+)
XLOC_009943 NA non-coding downstream 214488 25552322 ~ 25579827 (+)
XLOC_009948 NA non-coding downstream 492870 25830704 ~ 25831076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05820700_05833750 DYNC1I1 coding CI01000027 null 5820467 ~ 5834241 (+)