Fish Transcriptome and Expression Database

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model fish

XLOC_009937 (dre-mir-30d)

Basic Information

Item	Value
gene id	XLOC_009937
gene name	dre-mir-30d
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	25341416 ~ 25341543 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019805
GTGCTGTATATGGGTATAACTGGTTGTTCATGCCTGTAAACATCCCCGACTGGAAGCTGTGCTACGCGGAAAACGAGCTTTCAGTTGGATGTTTGCTGTCATCGTCCAGTTCTGTCGCCTTGTATTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081529

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00019805	True	128	miRNA	0.48	1	25341416	25341543

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009936	dync1i1	coding	upstream	3582	25316973 ~ 25337834 (+)
XLOC_009935	tbc1d31	coding	upstream	26280	25296389 ~ 25315136 (+)
XLOC_009934	si:dkey-29h14.10	coding	upstream	46231	25285998 ~ 25295185 (+)
XLOC_009933	fbxo32	coding	upstream	68783	25259313 ~ 25272633 (+)
XLOC_009932	klhl38b	coding	upstream	91002	25245857 ~ 25250414 (+)
XLOC_009938	dre-mir-30b	coding	downstream	181	25341724 ~ 25341811 (+)
XLOC_009939	zfat	coding	downstream	609	25342152 ~ 25360788 (+)
XLOC_009940	jarid2a	coding	downstream	65478	25407021 ~ 25500729 (+)
XLOC_009941	mylipb	coding	downstream	194450	25535993 ~ 25548738 (+)
XLOC_009942	NA	coding	downstream	202883	25544426 ~ 25550654 (+)
XLOC_009930	NA	non-coding	upstream	99106	25219435 ~ 25242310 (+)
XLOC_009931	NA	non-coding	upstream	106323	25233953 ~ 25235093 (+)
XLOC_009929	NA	non-coding	upstream	127438	25207618 ~ 25213978 (+)
XLOC_009913	BX539313.2	non-coding	upstream	422459	24905556 ~ 24918957 (+)
XLOC_009912	dre-mir-125a-1	non-coding	upstream	443163	24898171 ~ 24898253 (+)
XLOC_009943	NA	non-coding	downstream	210779	25552322 ~ 25579827 (+)
XLOC_009948	NA	non-coding	downstream	489161	25830704 ~ 25831076 (+)
XLOC_009949	NA	non-coding	downstream	617353	25958896 ~ 25960158 (+)

Expression

Co-expression Network